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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.211996 (58 seq.)
>W1710926346
LOEE01000061
Bacillota
Thermotalea metallivorans [LOEE]
48986
48910
-
Met
CAT
[ENA]
¡û
>W1710926380
LOEE01000098
Bacillota
Thermotalea metallivorans [LOEE]
534
458
-
Met
CAT
[ENA]
¡û
>W1710931155
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
6788
6864
+
Met
CAT
[ENA]
¡û
>W1710931159
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
7187
7263
+
Met
CAT
[ENA]
¡û
>W1710931162
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
7461
7537
+
Met
CAT
[ENA]
¡û
>W1710931183
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
20403
20327
-
Met
CAT
[ENA]
¡û
>W131187755
ARZA01000051
Bacillota
Caldisalinibacter kiritimatiensis L21-TH-D2 [ARZA]
691
615
-
Met
CAT
[ENA]
¡û
>W1711488989
MKIE01000005
Bacillota
Andreesenia angusta [MKIE]
175280
175204
-
Met
CAT
[ENA]
¡û
>W1711488992
MKIE01000005
Bacillota
Andreesenia angusta [MKIE]
174987
174911
-
Met
CAT
[ENA]
¡û
>W1711489031
MKIE01000037
Bacillota
Andreesenia angusta [MKIE]
339
415
+
Met
CAT
[ENA]
¡û
>C000837
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4445607
4445531
-
Met
CAT
[Ensembl]
¡û
>C000857
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4437013
4436937
-
Met
CAT
[Ensembl]
¡û
>w010451
AAKU01000209
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1979
2055
+
Met
CAT
[ENA]
¡û
>w010431
AAKU01000148
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
5887
5963
+
Met
CAT
[ENA]
¡û
>C171059851
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
2743251
2743175
-
Met
CAT
-
¡û
>C171059908
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
618842
618766
-
Met
CAT
-
¡û
>WENV180117197
OARD01000937
[OARD] human gut metagenome; ENVO:feces
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180346124
OBLN01028772
[OBLN] sediment metagenome; sediment
526
602
+
Ile2
CAT
[ENA]
¢þ
>WENV180634912
OCRB01159303
[OCRB] metagenome; diffuse fluid
79
155
+
Ile2
CAT
[ENA]
¢þ
>WENV180950199
ODUG01111582
[ODUG] human metagenome; G_DNA_Tongue dorsum
225
149
-
Ile2
CAT
[ENA]
¢þ
>WENV181180253
OEJT01161840
[OEJT] human metagenome; G_DNA_Supragingival plaque
5
81
+
Ile2
CAT
[ENA]
¢þ
>WENV183746299
POVV01025344
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
509
433
-
Ile2
CAT
[ENA]
¢þ
>WENV170677612
LDZT01007416
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1258
1334
+
Met
CAT
[ENA]
¢þ
>C191138254
CP035282
Bacillota
Acidilutibacter cellobiosedens JN-28 [CP035282]
2528933
2528857
-
Met
CAT
-
¡û
>C191138258
CP035282
Bacillota
Acidilutibacter cellobiosedens JN-28 [CP035282]
2528546
2528470
-
Met
CAT
-
¡û
>C191138262
CP035282
Bacillota
Acidilutibacter cellobiosedens JN-28 [CP035282]
2528159
2528083
-
Met
CAT
-
¡û
>W141557811
JHVL01000004
Bacillota
Clostridiisalibacter paucivorans DSM 22131 [JHVL]
139215
139139
-
Met
CAT
[ENA]
¡û
>W141619941
JJMM01000021
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
5620
5544
-
Met
CAT
[ENA]
¡û
>W141619964
JJMM01000023
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
108392
108316
-
Met
CAT
[ENA]
¡û
>W141619967
JJMM01000023
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
108050
107974
-
Met
CAT
[ENA]
¡û
>W1910211447
FMDO01000024
Bacillota
Proteiniborus sp. DW1 [FMDO]
140
216
+
Met
CAT
[ENA]
¡û
>W1910211451
FMDO01000025
Bacillota
Proteiniborus sp. DW1 [FMDO]
11
87
+
Met
CAT
[ENA]
¡û
>W1910211455
FMDO01000025
Bacillota
Proteiniborus sp. DW1 [FMDO]
470
546
+
Met
CAT
[ENA]
¡û
>W1910211728
FMIF01000036
Bacillota
Sporanaerobacter sp. PP17-6a [FMIF]
1020
1096
+
Met
CAT
[ENA]
¡û
>W1910211732
FMIF01000036
Bacillota
Sporanaerobacter sp. PP17-6a [FMIF]
1407
1483
+
Met
CAT
[ENA]
¡û
>W1910496837
FXVB02000062
Bacillota
Bacillota bacterium HV4-6-A5C [FXVB]
1928
1852
-
Met
CAT
[ENA]
¡û
>W1910496841
FXVB02000062
Bacillota
Bacillota bacterium HV4-6-A5C [FXVB]
1541
1465
-
Met
CAT
[ENA]
¡û
>W1910918609
NIBG01000031
Bacillota
Anaeromicrobium sediminis DY2726D [NIBG]
42170
42094
-
Met
CAT
[ENA]
¡û
>W1810000021
BDQY01000021
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
386
462
+
Met
CAT
[ENA]
¡û
>W1810000028
BDQY01000045
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
5598
5522
-
Met
CAT
[ENA]
¡û
>W1810000039
BDQY01000065
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
382
306
-
Met
CAT
[ENA]
¡û
>W1810000064
BDQY01000086
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
292
216
-
Met
CAT
[ENA]
¡û
>W1510725398
CXYX01000015
Bacillota
Inediibacterium massiliense mt12 [CXYX]
1635348
1635272
-
Met
CAT
[ENA]
¡û
>W1510725402
CXYX01000015
Bacillota
Inediibacterium massiliense mt12 [CXYX]
1635019
1634943
-
Met
CAT
[ENA]
¡û
>W1610613903
LGGM01000008
Bacillota
Clostridiales bacterium 38_11 [LGGM]
1258
1334
+
Met
CAT
[ENA]
¡û
>W1610783839
LOEE01000061
Bacillota
Thermotalea metallivorans [LOEE]
48986
48910
-
Met
CAT
[ENA]
¡û
>W1610783873
LOEE01000098
Bacillota
Thermotalea metallivorans [LOEE]
534
458
-
Met
CAT
[ENA]
¡û
>W1610788697
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
6788
6864
+
Met
CAT
[ENA]
¡û
>W1610788701
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
7187
7263
+
Met
CAT
[ENA]
¡û
>W1610788704
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
7461
7537
+
Met
CAT
[ENA]
¡û
>W1610788725
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
20403
20327
-
Met
CAT
[ENA]
¡û
>W1710506671
FMUS01000003
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
46453
46529
+
Met
CAT
[ENA]
¡û
>W1710506708
FMUS01000070
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
490
414
-
Met
CAT
[ENA]
¡û
>W1710553640
FOHU01000001
Bacillota
Natronincola peptidivorans [FOHU]
518225
518149
-
Met
CAT
[ENA]
¡û
>W1710586607
FQXI01000005
Bacillota
Anaerosphaera aminiphila DSM 21120 [FQXI]
118280
118204
-
Met
CAT
[ENA]
¡û
>W1710589061
FQZV01000020
Bacillota
Geosporobacter subterraneus DSM 17957 [FQZV]
69285
69209
-
Met
CAT
[ENA]
¡û
>W1710589450
FRAE01000021
Bacillota
Tepidibacter formicigenes DSM 15518 [FRAE]
41217
41141
-
Met
CAT
[ENA]
¡û
>W1710734986
LGGM01000008
Bacillota
Clostridiales bacterium 38_11 [LGGM]
1258
1334
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK