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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.212255 (30 seq.)
>W1711120840
LUHG01000039
Bacteroidota
Hydrotalea flava [LUHG]
129516
129440
-
Arg
TCT
[ENA]
¡û
>W1711421906
MIAG01000010
Bacteroidota
Sphingobacteriia bacterium RIFOXYC2_FULL_35_18 [MIAG]
195377
195453
+
Arg
TCT
[ENA]
¡û
>W1711421920
MIAH01000011
Bacteroidota
Sphingobacteriia bacterium RIFOXYD2_FULL_35_12 [MIAH]
281
205
-
Arg
TCT
[ENA]
¡û
>W141167898
AXUM01000013
Bacteroidota
Sediminibacterium sp. C3 [AXUM]
64722
64800
+
Arg
TCT
[ENA]
¡û
>W141171269
AXZP01000041
Bacteroidota
Sediminibacterium salmoneum NBRC 103935 [AXZP]
59009
58933
-
Arg
TCT
[ENA]
¡û
>WENV181840158
OGVO01047889
[OGVO] freshwater metagenome; freshwater
213
289
+
Arg
TCT
[ENA]
¡û
>WENV181841322
OGVR01008312
[OGVR] freshwater metagenome; freshwater
720
645
-
Arg
TCT
[ENA]
¡û
>WENV181843161
OGVU01001738
[OGVU] freshwater metagenome; freshwater
2593
2667
+
Arg
TCT
[ENA]
¡û
>WENV183729209
PJTQ01011369
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1049
975
-
Arg
TCT
[ENA]
¡û
>WENV183734611
PJTZ01024981
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
44
118
+
Arg
TCT
[ENA]
¡û
>WENV183737813
PJUD01036001
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
607
533
-
Arg
TCT
[ENA]
¡û
>WENV183740820
PJUF01011885
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1438
1512
+
Arg
TCT
[ENA]
¡û
>WENV183741057
PJUF01032540
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
403
477
+
Arg
TCT
[ENA]
¡û
>WENV170986084
MWVX01014945
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
952
1030
+
Arg
TCT
[ENA]
¡û
>WENV170986331
MWVX01030667
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
516
442
-
Arg
TCT
[ENA]
¡û
>WENV170986677
MWVX01065274
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
332
255
-
Arg
TCT
[ENA]
¡û
>WENV170986916
MWVX01096197
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
403
477
+
Arg
TCT
[ENA]
¡û
>WENV170988627
MWVX01560775
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
274
350
+
Arg
TCT
[ENA]
¡û
>WENV170993951
MWWC01055442
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
98
22
-
Arg
TCT
[ENA]
¡û
>W1810686084
QKZV01000001
Bacteroidota
Hydrotalea sandarakina DSM 23241 [QKZV]
155103
155177
+
Arg
TCT
[ENA]
¡û
>W1810692616
QLKR01000001
Bacteroidota
Niabella yanshanensis HAMBI_3031 [QLKR]
876889
876815
-
Arg
TCT
[ENA]
¡û
>ENV09003498
ADGO01067981
Compost metagenome contig00001
273
349
+
Arg
TCT
[ENA]
¡û
>W2110447195
JAESDL010000001
Bacteroidota
Hydrotalea lipotrueae TMF_100 [JAESDL]
157412
157486
+
Arg
TCT
[ENA]
¡û
>W2110597244
JAHEAI010000001
Bacteroidota
Flavihumibacter sp. IMCC34837 [JAHEAI]
1340139
1340213
+
Arg
TCT
[ENA]
¡û
>W2110748358
MBUA01000001
Bacteroidota
Flavihumibacter stibioxidans YS-17 [MBUA]
240485
240559
+
Arg
TCT
[ENA]
¡û
>C231314626
CP092333
Bacteroidota
Flavihumibacter fluminis (ex Park et al. 2022) IMCC34837 [CP092333]
1552383
1552457
+
Arg
TCT
-
¡û
>C241352466
CP139960
Bacteroidota
Niabella yanshanensis HAMBI_3031 [CP139960]
2030863
2030789
-
Arg
TCT
-
¡û
>W1610503583
FLNQ01000086
Bacteroidota
Hydrotalea flava [FLNQ]
4467
4391
-
Arg
TCT
[ENA]
¡û
>W1610503593
FLNR01000030
Bacteroidota
Hydrotalea flava [FLNR]
16244
16168
-
Arg
TCT
[ENA]
¡û
>W1610932037
LUHG01000039
Bacteroidota
Hydrotalea flava [LUHG]
129516
129440
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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