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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21229 (31 seq.)
>W1710909815
LNQV01000026
Betaproteobacteria
Aquitalea pelogenes [LNQV]
27197
27287
+
Ser
GGA
[ENA]
¡û
>W1711021237
LQZA01000004
Betaproteobacteria
Ferrovum sp. PN-J185 [LQZA]
40621
40531
-
Ser
GGA
[ENA]
¡û
>W1711387328
MEGN01000004
Betaproteobacteria
Thiobacillus sp. SCN 65-179 [MEGN]
74879
74969
+
Ser
GGA
[ENA]
¡û
>W1711504104
MKUF01000019
Betaproteobacteria
Thiobacillus sp. 65-69 [MKUF]
80110
80200
+
Ser
GGA
[ENA]
¡û
>W1711506575
MKWN01000023
Betaproteobacteria
Thiobacillus sp. 65-29 [MKWN]
32817
32727
-
Ser
GGA
[ENA]
¡û
>C001313
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
2508863
2508773
-
Ser
GGA
[Ensembl]
¡û
>W131052499
AMYZ01000013
Betaproteobacteria
beta proteobacterium L13 [AMYZ]
74551
74641
+
Ser
GGA
[ENA]
¡û
>W131052500
AMYZ01000013
Betaproteobacteria
beta proteobacterium L13 [AMYZ]
74704
74794
+
Ser
GGA
[ENA]
¡û
>W131215533
ATVC01000007
Betaproteobacteria
Aquaspirillum serpens DSM 68 [ATVC]
6965
7055
+
Ser
GGA
[ENA]
¡û
>WENV180117886
OARM01000835
[OARM] human gut metagenome; ENVO:feces
286
196
-
Ser
GGA
[ENA]
¢þ
>WENV180265174
OBEQ011638650
[OBEQ] groundwater metagenome; groundwater
875
785
-
Ser
GGA
[ENA]
¢þ
>WENV180353432
OBLQ010771433
[OBLQ] soil metagenome; soil
153
63
-
Ser
GGA
[ENA]
¢þ
>WENV180943742
ODUC01002187
[ODUC] human metagenome; G_DNA_Supragingival plaque
7664
7754
+
Ser
GGA
[ENA]
¢þ
>WENV181188414
OEOE01124540
[OEOE] activated sludge metagenome; Activated Sludge
276
186
-
Ser
GGA
[ENA]
¢þ
>WENV170559795
CXWL01150593
[CXWL] groundwater metagenome; biofilm material
204
114
-
Ser
GGA
[ENA]
¢þ
>C181058473
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
1317453
1317363
-
Ser
GGA
-
¡û
>C191019163
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
1948918
1949008
+
Ser
GGA
-
¡û
>W1910183572
BJNV01000044
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
4424
4334
-
Ser
GGA
[ENA]
¡û
>C09107070
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
1140299
1140209
-
Ser
GGA
[Ensembl]
¡û
>W11114439
ADDK02000004
Betaproteobacteria
Azospira oryzae PS [ADDK]
211770
211860
+
Ser
GGA
[ENA]
¡û
>W1510741015
CYHA01000002
Betaproteobacteria
Gulbenkiania indica DSM 17901 [CYHA]
333055
333145
+
Ser
GGA
[ENA]
¡û
>W1511678863
LFDT01000013
Betaproteobacteria
Vogesella sp. EB [LFDT]
12819
12729
-
Ser
GGA
[ENA]
¡û
>W1511678864
LFDT01000013
Betaproteobacteria
Vogesella sp. EB [LFDT]
12680
12590
-
Ser
GGA
[ENA]
¡û
>C161095101
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
2582330
2582240
-
Ser
GGA
-
¡û
>C131000294
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
1931517
1931607
+
Ser
GGA
[Ensembl]
¡û
>W1610631868
LION01000002
Betaproteobacteria
Gulbenkiania indica [LION]
333055
333145
+
Ser
GGA
[ENA]
¡û
>W1610638017
LIVN01000077
Betaproteobacteria
Gulbenkiania mobilis [LIVN]
832
922
+
Ser
GGA
[ENA]
¡û
>W1610768174
LNQV01000026
Betaproteobacteria
Aquitalea pelogenes [LNQV]
27197
27287
+
Ser
GGA
[ENA]
¡û
>W1610869525
LQZA01000004
Betaproteobacteria
Ferrovum sp. PN-J185 [LQZA]
40621
40531
-
Ser
GGA
[ENA]
¡û
>W1710764753
LION01000002
Betaproteobacteria
Gulbenkiania indica [LION]
333055
333145
+
Ser
GGA
[ENA]
¡û
>W1710772790
LIVN01000077
Betaproteobacteria
Gulbenkiania mobilis [LIVN]
832
922
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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