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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.212869 (91 seq.)
>W131226337
AUEH01000057
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AUEH]
14700
14625
-
Met
CAT
[ENA]
¡û
>W131226344
AUEH01000057
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AUEH]
13998
13923
-
Met
CAT
[ENA]
¡û
>W1711525650
MLQS01000001
Bacillota
Anaerobacillus alkalidiazotrophicus [MLQS]
869403
869327
-
Met
CAT
[ENA]
¡û
>W1711744443
MUHW01000004
Bacillota
Oribacterium sp. C9 [MUHW]
84
159
+
Met
CAT
[ENA]
¡û
>W1711744477
MUHW01000045
Bacillota
Oribacterium sp. C9 [MUHW]
6703
6628
-
Met
CAT
[ENA]
¡û
>WENV180391206
OBPM01039792
[OBPM] marine metagenome; ENVO:00002010
313
237
-
fMet
CAT
[ENA]
¢þ
>W141039643
ALYD01000025
Bacillota
Lachnospiraceae bacterium JC7 [ALYD]
47343
47267
-
Met
CAT
[ENA]
¡û
>W141039658
ALYD01000057
Bacillota
Lachnospiraceae bacterium JC7 [ALYD]
6650
6574
-
Met
CAT
[ENA]
¡û
>WENV180659374
OCVV010855022
[OCVV] gut metagenome; gut
237
161
-
fMet
CAT
[ENA]
¢þ
>WENV180659378
OCVV010855022
[OCVV] gut metagenome; gut
237
161
-
fMet
CAT
[ENA]
¢þ
>WENV180679961
OCVV012417621
[OCVV] gut metagenome; gut
190
115
-
fMet
CAT
[ENA]
¢þ
>WENV180679962
OCVV012417621
[OCVV] gut metagenome; gut
190
115
-
fMet
CAT
[ENA]
¢þ
>WENV180828608
ODKA01015364
[ODKA] human metagenome; G_DNA_Stool
1915
1840
-
fMet
CAT
[ENA]
¢þ
>WENV180829126
ODKA01060922
[ODKA] human metagenome; G_DNA_Stool
254
328
+
fMet
CAT
[ENA]
¢þ
>WENV181194512
OEQQ01013776
[OEQQ] metagenome; Caecal content
741
817
+
fMet
CAT
[ENA]
¢þ
>WENV181256366
OFFT01002861
[OFFT] mouse gut metagenome; faeces
8264
8189
-
fMet
CAT
[ENA]
¢þ
>WENV181303135
OFHP01001498
[OFHP] mouse gut metagenome; faeces
10359
10284
-
fMet
CAT
[ENA]
¢þ
>WENV181415849
OGCL01030495
[OGCL] hot springs metagenome; Hot spring water
231
306
+
fMet
CAT
[ENA]
¢þ
>WENV181841461
OGVR01036653
[OGVR] freshwater metagenome; freshwater
115
39
-
fMet
CAT
[ENA]
¢þ
>WENV181957406
OGZL01006422
[OGZL] human gut metagenome; faeces
7178
7251
+
fMet
CAT
[ENA]
¢þ
>WENV182278205
OHUS01015291
[OHUS] human gut metagenome; feces
579
503
-
fMet
CAT
[ENA]
¢þ
>WENV182485822
OIRQ01016561
[OIRQ] human gut metagenome; human gut
788
861
+
fMet
CAT
[ENA]
¢þ
>WENV182893095
OKSI01048511
[OKSI] human gut metagenome; feces
462
537
+
fMet
CAT
[ENA]
¢þ
>C193000094
AP018537
Bacillota
Erysipelotrichaceae bacterium GAM147 [AP018537]
1550063
1549987
-
Met
CAT
-
¡û
>C193000095
AP018537
Bacillota
Erysipelotrichaceae bacterium GAM147 [AP018537]
809021
808945
-
Met
CAT
-
¡û
>C191075178
CP031513
Bacillota
Bombilactobacillus bombi BI-2.5 [CP031513]
276045
276120
+
Met
CAT
-
¡û
>C191075184
CP031513
Bacillota
Bombilactobacillus bombi BI-2.5 [CP031513]
276671
276746
+
Met
CAT
-
¡û
>W143014840
JHXA01000001
Bacillota
Kandleria vitulina WCE2011 [JHXA]
25183
25259
+
Met
CAT
[ENA]
¡û
>W09300436
ACDT01000041
Bacillota
Coprobacillus sp. D7 D7 [ACDT]
705
781
+
Met
CAT
[ENA]
¡û
>W1930003874
FNLJ01000014
Bacillota
Traorella massiliensis Marseille-P3110 [FNLJ]
264974
265050
+
Met
CAT
[ENA]
¡û
>W1910930170
NISN01000001
Bacillota
Bacillus sp. FJAT-45037 [NISN]
1995
2068
+
Met
CAT
[ENA]
¡û
>W1810838177
QSTB01000008
Bacillota
Ligilactobacillus salivarius OM08-20 [QSTB]
1489
1564
+
Met
CAT
[ENA]
¡û
>W1830007807
PYLP01000001
Bacillota
Faecalibacillus faecis SNUG30370 [PYLP]
247
171
-
Met
CAT
[ENA]
¡û
>W1830007808
PYLP01000008
Bacillota
Faecalibacillus faecis SNUG30370 [PYLP]
96740
96664
-
Met
CAT
[ENA]
¡û
>W1830007809
PYLP01000009
Bacillota
Faecalibacillus faecis SNUG30370 [PYLP]
53
129
+
Met
CAT
[ENA]
¡û
>W1830007810
PYLP01000027
Bacillota
Faecalibacillus faecis SNUG30370 [PYLP]
20180
20256
+
Met
CAT
[ENA]
¡û
>W1830016297
QRWM01000004
Bacillota
Thomasclavelia ramosa AF19-21AC [QRWM]
114526
114450
-
Met
CAT
[ENA]
¡û
>W1830016839
QSCB01000001
Bacillota
Thomasclavelia ramosa OF04-4AC [QSCB]
67034
66958
-
Met
CAT
[ENA]
¡û
>W1830017269
QSGE01000002
Bacillota
Coprobacillus sp. AM42-12AC [QSGE]
86076
86152
+
Met
CAT
[ENA]
¡û
>W1830017270
QSGE01000011
Bacillota
Coprobacillus sp. AM42-12AC [QSGE]
19937
20013
+
Met
CAT
[ENA]
¡û
>W1830017737
QSLK01000004
Bacillota
Thomasclavelia ramosa AM25-30 [QSLK]
133210
133134
-
Met
CAT
[ENA]
¡û
>W1830018738
QTUO01000037
Bacillota
Catenibacterium sp. AM22-15 [QTUO]
21077
21001
-
Met
CAT
[ENA]
¡û
>W1830018804
QTVZ01000002
Bacillota
Coprobacillus sp. AF27-24BH [QTVZ]
291425
291349
-
Met
CAT
[ENA]
¡û
>W1830018842
QTXA01000003
Bacillota
Coprobacillus sp. AF17-17AC [QTXA]
375
451
+
Met
CAT
[ENA]
¡û
>W1830018843
QTXA01000008
Bacillota
Coprobacillus sp. AF17-17AC [QTXA]
57593
57669
+
Met
CAT
[ENA]
¡û
>W1830018845
QTXA01000053
Bacillota
Coprobacillus sp. AF17-17AC [QTXA]
293
369
+
Met
CAT
[ENA]
¡û
>W1830018846
QTXA01000053
Bacillota
Coprobacillus sp. AF17-17AC [QTXA]
543
619
+
Met
CAT
[ENA]
¡û
>W1830018853
QTXE01000012
Bacillota
Coprobacillus sp. AF16-47 [QTXE]
58184
58260
+
Met
CAT
[ENA]
¡û
>W1830018854
QTXE01000026
Bacillota
Coprobacillus sp. AF16-47 [QTXE]
501
577
+
Met
CAT
[ENA]
¡û
>W1830018901
QTYT01000012
Bacillota
Coprobacillus sp. TM10-10 [QTYT]
74664
74588
-
Met
CAT
[ENA]
¡û
>W1830018902
QTYT01000013
Bacillota
Coprobacillus sp. TM10-10 [QTYT]
23936
24012
+
Met
CAT
[ENA]
¡û
>W1830018953
QUCH01000015
Bacillota
Coprobacillus sp. AM23-2 [QUCH]
32552
32476
-
Met
CAT
[ENA]
¡û
>W1830018954
QUCH01000019
Bacillota
Coprobacillus sp. AM23-2 [QUCH]
386
462
+
Met
CAT
[ENA]
¡û
>W1830018955
QUCH01000034
Bacillota
Coprobacillus sp. AM23-2 [QUCH]
19965
20041
+
Met
CAT
[ENA]
¡û
>W1830018981
QUCV01000023
Bacillota
Coprobacillus sp. AM17-34 [QUCV]
924
1000
+
Met
CAT
[ENA]
¡û
>W1830019071
QUEJ01000012
Bacillota
Coprobacillus sp. AF31-1BH [QUEJ]
20017
20093
+
Met
CAT
[ENA]
¡û
>W1830019072
QUEJ01000018
Bacillota
Coprobacillus sp. AF31-1BH [QUEJ]
52465
52389
-
Met
CAT
[ENA]
¡û
>W1830019209
QUGK01000008
Bacillota
Coprobacillus sp. AF19-3 [QUGK]
56860
56936
+
Met
CAT
[ENA]
¡û
>W1830019210
QUGK01000023
Bacillota
Coprobacillus sp. AF19-3 [QUGK]
40626
40550
-
Met
CAT
[ENA]
¡û
>W1830019275
QUHO01000002
Bacillota
Coprobacillus sp. AF13-15 [QUHO]
19959
20035
+
Met
CAT
[ENA]
¡û
>W1830019276
QUHO01000008
Bacillota
Coprobacillus sp. AF13-15 [QUHO]
50033
50109
+
Met
CAT
[ENA]
¡û
>C151089939
CP012034
Bacillota
Companilactobacillus ginsenosidimutans EMML 3041 [CP012034]
872176
872101
-
Met
CAT
[Ensembl]
¡û
>W1511505272
JXJQ01000006
Bacillota
Bombilactobacillus mellifer Bin4 [JXJQ]
928
1003
+
Met
CAT
[ENA]
¡û
>W1610031980
AYZF01000017
Bacillota
Liquorilactobacillus sucicola DSM 21376 = JCM 15457 [AYZF]
1402
1477
+
Met
CAT
[ENA]
¡û
>W1610034933
AZEC01000045
Bacillota
Schleiferilactobacillus perolens DSM 12744 [AZEC]
719
644
-
Met
CAT
[ENA]
¡û
>W1610034943
AZEC01000099
Bacillota
Schleiferilactobacillus perolens DSM 12744 [AZEC]
205
130
-
Met
CAT
[ENA]
¡û
>W1610037211
AZFW01000134
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AZFW]
4
79
+
Met
CAT
[ENA]
¡û
>W1610037221
AZFW01000151
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AZFW]
14297
14222
-
Met
CAT
[ENA]
¡û
>W1610037227
AZFW01000151
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AZFW]
13604
13529
-
Met
CAT
[ENA]
¡û
>W1610060794
BCLJ01000021
Bacillota
Companilactobacillus farciminis [BCLJ]
43044
42969
-
Met
CAT
[ENA]
¡û
>W123000020
ACWL01000042
Bacillota
Coprobacillus sp. 3_3_56FAA [ACWL]
362875
362951
+
Met
CAT
[ENA]
¡û
>W123001783
AKCB01000001
Bacillota
Coprobacillus cateniformis D6 [AKCB]
454093
454017
-
Met
CAT
[ENA]
¡û
>W1630000099
ACTF01000005
Bacillota
Coprobacillus sp. 8_1_38FAA [ACTF]
116282
116358
+
Met
CAT
[ENA]
¡û
>W1630000100
ACTF01000011
Bacillota
Coprobacillus sp. 8_1_38FAA [ACTF]
99604
99528
-
Met
CAT
[ENA]
¡û
>W1630003086
BBZW01000001
Bacillota
Clostridia bacterium UC5.1-1E3 [BBZW]
197810
197734
-
Met
CAT
[ENA]
¡û
>W1630003915
CYZB01000027
Bacillota
Catenibacterium mitsuokai [CYZB]
34788
34864
+
Met
CAT
[ENA]
¡û
>W1630003944
CYZJ01000156
Bacillota
Roseburia hominis [CYZJ]
2930
3006
+
Met
CAT
[ENA]
¡û
>W1730000006
ACTF01000005
Bacillota
Coprobacillus sp. 8_1_38FAA [ACTF]
116282
116358
+
Met
CAT
[ENA]
¡û
>W1730000007
ACTF01000011
Bacillota
Coprobacillus sp. 8_1_38FAA [ACTF]
99604
99528
-
Met
CAT
[ENA]
¡û
>W1730002308
BBZW01000001
Bacillota
Clostridia bacterium UC5.1-1E3 [BBZW]
197810
197734
-
Met
CAT
[ENA]
¡û
>W1730003238
CYZB01000027
Bacillota
Catenibacterium mitsuokai [CYZB]
34788
34864
+
Met
CAT
[ENA]
¡û
>W1730003267
CYZJ01000156
Bacillota
Roseburia hominis [CYZJ]
2930
3006
+
Met
CAT
[ENA]
¡û
>W1730040307
NFHI01000001
Bacillota
Massilimicrobiota sp. An80 An80 [NFHI]
765
841
+
Met
CAT
[ENA]
¡û
>W1730040477
NFKR01000106
Bacillota
Erysipelatoclostridium sp. An173 [NFKR]
515
591
+
Met
CAT
[ENA]
¡û
>W1710028907
AYZF01000017
Bacillota
Liquorilactobacillus sucicola DSM 21376 = JCM 15457 [AYZF]
1402
1477
+
Met
CAT
[ENA]
¡û
>W1710032060
AZEC01000045
Bacillota
Schleiferilactobacillus perolens DSM 12744 [AZEC]
719
644
-
Met
CAT
[ENA]
¡û
>W1710032070
AZEC01000099
Bacillota
Schleiferilactobacillus perolens DSM 12744 [AZEC]
205
130
-
Met
CAT
[ENA]
¡û
>W1710034250
AZFW01000134
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AZFW]
4
79
+
Met
CAT
[ENA]
¡û
>W1710034260
AZFW01000151
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AZFW]
14297
14222
-
Met
CAT
[ENA]
¡û
>W1710034266
AZFW01000151
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AZFW]
13604
13529
-
Met
CAT
[ENA]
¡û
>W1710058090
BCLJ01000021
Bacillota
Companilactobacillus farciminis [BCLJ]
43044
42969
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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