This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.214412 (12 seq.)
>W1711574649
MNFV01000122
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_61_5 [MNFV]
1324
1400
+
Arg
CCT
[ENA]
¡û
>W1711575253
MNHV01000043
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_60_7 [MNHV]
352
428
+
Arg
CCT
[ENA]
¡û
>WENV180320720
OBKQ01011269
[OBKQ] soil metagenome; Clay
583
659
+
Arg
CCT
[ENA]
¢þ
>WENV180342597
OBLJ01055859
[OBLJ] soil metagenome; Clay
271
347
+
Arg
CCT
[ENA]
¢þ
>WENV180354085
OBLQ011366071
[OBLQ] soil metagenome; soil
167
91
-
Arg
CCT
[ENA]
¢þ
>WENV180354221
OBLQ011494622
[OBLQ] soil metagenome; soil
106
182
+
Arg
CCT
[ENA]
¢þ
>WENV180584240
OCOJ01032981
[OCOJ] soil metagenome; soil
4006
4082
+
Arg
CCT
[ENA]
¢þ
>WENV181286292
OFGV01012834
[OFGV] soil metagenome; Clay
359
435
+
Arg
CCT
[ENA]
¢þ
>WENV181292110
OFHD01038078
[OFHD] soil metagenome; Clay
262
186
-
Arg
CCT
[ENA]
¢þ
>WENV181292610
OFHF01001553
[OFHF] soil metagenome; Clay
757
681
-
Arg
CCT
[ENA]
¢þ
>WENV181293434
OFHG01003572
[OFHG] soil metagenome; Clay
854
778
-
Arg
CCT
[ENA]
¢þ
>WENV181296805
OFHK01000370
[OFHK] soil metagenome; Clay
10332
10408
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK