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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.214538 (103 seq.)
>W1711094124
LTFQ01000042
Gammaproteobacteria
Haemophilus sp. HMSC066A11 [LTFQ]
8774
8698
-
Arg
ACG
[ENA]
¡û
>W1711101821
LTND01000024
Gammaproteobacteria
Haemophilus sp. HMSC71H05 [LTND]
195412
195488
+
Arg
ACG
[ENA]
¡û
>W1711269110
LZDP01000012
Gammaproteobacteria
Haemophilus influenzae [LZDP]
19816
19892
+
Arg
ACG
[ENA]
¡û
>W1711282372
LZMY01000016
Gammaproteobacteria
Haemophilus parainfluenzae [LZMY]
221654
221730
+
Arg
ACG
[ENA]
¡û
>W1711283450
LZPH01000028
Gammaproteobacteria
Haemophilus aegyptius [LZPH]
19233
19157
-
Arg
ACG
[ENA]
¡û
>W1711359926
MDJB01000059
Gammaproteobacteria
Haemophilus quentini [MDJB]
539
463
-
Arg
ACG
[ENA]
¡û
>W1711515474
MLHO01000041
Gammaproteobacteria
Rodentibacter genomosp. 2 [MLHO]
36395
36319
-
Arg
ACG
[ENA]
¡û
>W1711626409
MPJK01000018
Gammaproteobacteria
Haemophilus parainfluenzae [MPJK]
9023
8947
-
Arg
ACG
[ENA]
¡û
>C014061
AE016827
Gammaproteobacteria
[Mannheimia] succiniciproducens MBEL55E [AE016827]
383579
383655
+
Arg
ACG
[Ensembl]
¡û
>C014062
AE016827
Gammaproteobacteria
[Mannheimia] succiniciproducens MBEL55E [AE016827]
383760
383836
+
Arg
ACG
[Ensembl]
¡û
>WENV180004453
FLRS01005370
[FLRS] metagenome; saliva
1
77
+
Arg
ACG
[ENA]
¢þ
>WENV180010683
FLSD01054654
[FLSD] metagenome; saliva
131
207
+
Arg
ACG
[ENA]
¢þ
>WENV180121155
OASQ01001656
[OASQ] human gut metagenome; faeces
2071
1995
-
Arg
ACG
[ENA]
¢þ
>WENV180312877
OBJZ01001205
[OBJZ] human gut metagenome; fecal sample
1171
1095
-
Arg
ACG
[ENA]
¢þ
>WENV180407625
OBUR01000034
[OBUR] human gut metagenome; faeces
91996
92072
+
Arg
ACG
[ENA]
¢þ
>WENV180513508
OCHA01066290
[OCHA] human gut metagenome; human gut
104
180
+
Arg
ACG
[ENA]
¢þ
>WENV180554233
OCJN01000017
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
138142
138218
+
Arg
ACG
[ENA]
¢þ
>WENV181514706
OGGV01035069
[OGGV] metagenome; Human gut stool
219
143
-
Arg
ACG
[ENA]
¢þ
>WENV181578564
OGJY01002285
[OGJY] metagenome; Human gut stool
2825
2901
+
Arg
ACG
[ENA]
¢þ
>WENV181591376
OGKO01043673
[OGKO] metagenome; Human gut stool
404
480
+
Arg
ACG
[ENA]
¢þ
>WENV181833093
OGUQ01000306
[OGUQ] metagenome; Human gut stool
43624
43700
+
Arg
ACG
[ENA]
¢þ
>WENV181880812
OGXG01009226
[OGXG] human gut metagenome; faeces
755
831
+
Arg
ACG
[ENA]
¢þ
>WENV182499757
OITV01001143
[OITV] human gut metagenome; human gut
647
723
+
Arg
ACG
[ENA]
¢þ
>WENV182506795
OIVC01005974
[OIVC] human gut metagenome; human gut
142
66
-
Arg
ACG
[ENA]
¢þ
>WENV182685530
OJNY01069413
[OJNY] human gut metagenome; human gut
402
326
-
Arg
ACG
[ENA]
¢þ
>WENV182823950
OKBY01000208
[OKBY] human gut metagenome; human gut
2141
2217
+
Arg
ACG
[ENA]
¢þ
>C181042562
CP020012
Gammaproteobacteria
Haemophilus influenzae 6P24H2 [CP020012]
782497
782421
-
Arg
ACG
-
¡û
>C181197468
CP031238
Gammaproteobacteria
Haemophilus haemolyticus M28486 [CP031238]
976053
976129
+
Arg
ACG
-
¡û
>C181216290
LS483480
Gammaproteobacteria
Haemophilus influenzae NCTC13377 [LS483480]
373702
373778
+
Arg
ACG
-
¡û
>W09103636
AAKC01000007
Gammaproteobacteria
Actinobacillus succinogenes 130Z [AAKC]
37953
37877
-
Arg
ACG
[ENA]
¡û
>W1910832721
MZHI01000042
Gammaproteobacteria
Haemophilus influenzae 91P86H1 [MZHI]
19026
19102
+
Arg
ACG
[ENA]
¡û
>W1910833733
MZIC01000013
Gammaproteobacteria
Haemophilus influenzae 74P1H1 [MZIC]
7167
7091
-
Arg
ACG
[ENA]
¡û
>W1910833938
MZIG01000003
Gammaproteobacteria
Haemophilus influenzae 70P13H1 [MZIG]
52321
52397
+
Arg
ACG
[ENA]
¡û
>W1910834007
MZIH01000011
Gammaproteobacteria
Haemophilus influenzae 70P11H1 [MZIH]
53887
53963
+
Arg
ACG
[ENA]
¡û
>W1910834702
MZIU01000038
Gammaproteobacteria
Haemophilus influenzae 5P1H1 [MZIU]
23142
23218
+
Arg
ACG
[ENA]
¡û
>W1910835326
MZJG01000036
Gammaproteobacteria
Haemophilus influenzae 55P21H1 [MZJG]
75717
75793
+
Arg
ACG
[ENA]
¡û
>W1910835794
MZJP01000036
Gammaproteobacteria
Haemophilus influenzae 47P68H1 [MZJP]
18518
18594
+
Arg
ACG
[ENA]
¡û
>W1910835831
MZJQ01000022
Gammaproteobacteria
Haemophilus influenzae 47P38H1 [MZJQ]
22527
22603
+
Arg
ACG
[ENA]
¡û
>W1910835977
MZJT01000018
Gammaproteobacteria
Haemophilus influenzae 46P30H6 [MZJT]
8737
8661
-
Arg
ACG
[ENA]
¡û
>W1910836290
MZJZ01000012
Gammaproteobacteria
Haemophilus influenzae 39P25H [MZJZ]
26510
26586
+
Arg
ACG
[ENA]
¡û
>W1910837218
MZKR01000022
Gammaproteobacteria
Haemophilus influenzae 14P8H4 [MZKR]
139
215
+
Arg
ACG
[ENA]
¡û
>W1910837953
MZLF01000033
Gammaproteobacteria
Haemophilus influenzae 135P30H1 [MZLF]
7265
7189
-
Arg
ACG
[ENA]
¡û
>W1910838766
MZLV01000007
Gammaproteobacteria
Haemophilus influenzae 116P14H1 [MZLV]
8842
8766
-
Arg
ACG
[ENA]
¡û
>W1910874849
NDZD01000491
Gammaproteobacteria
Haemophilus influenzae 106P3H1 [NDZD]
329
253
-
Arg
ACG
[ENA]
¡û
>W1910875248
NDZL01000041
Gammaproteobacteria
Haemophilus influenzae 124P2H1 [NDZL]
8519
8443
-
Arg
ACG
[ENA]
¡û
>W1910875586
NDZR01000926
Gammaproteobacteria
Haemophilus influenzae 126P21H1 [NDZR]
12347
12423
+
Arg
ACG
[ENA]
¡û
>W1910875927
NDZY01000074
Gammaproteobacteria
Haemophilus influenzae 133P17H1 [NDZY]
8403
8327
-
Arg
ACG
[ENA]
¡û
>W1910876288
NEAF01000045
Gammaproteobacteria
Haemophilus influenzae 18P17H2 [NEAF]
8737
8661
-
Arg
ACG
[ENA]
¡û
>W1910876389
NEAH01000119
Gammaproteobacteria
Haemophilus influenzae 19P68H7 [NEAH]
8370
8294
-
Arg
ACG
[ENA]
¡û
>W1910877087
NEAV01000043
Gammaproteobacteria
Haemophilus influenzae 32P8H3 [NEAV]
8871
8795
-
Arg
ACG
[ENA]
¡û
>W1910877088
NEAV01000043
Gammaproteobacteria
Haemophilus influenzae 32P8H3 [NEAV]
8737
8661
-
Arg
ACG
[ENA]
¡û
>W1910877131
NEAW01000032
Gammaproteobacteria
Haemophilus influenzae 33P110H3 [NEAW]
22484
22560
+
Arg
ACG
[ENA]
¡û
>W1910877958
NEBM01000034
Gammaproteobacteria
Haemophilus influenzae 46P159H1 [NEBM]
8746
8670
-
Arg
ACG
[ENA]
¡û
>W1910878191
NEBQ01000101
Gammaproteobacteria
Haemophilus influenzae 47P41H1 [NEBQ]
20729
20805
+
Arg
ACG
[ENA]
¡û
>W1910878780
NECC01000042
Gammaproteobacteria
Haemophilus influenzae 56P68H1 [NECC]
8841
8765
-
Arg
ACG
[ENA]
¡û
>W1910879540
NECR01000037
Gammaproteobacteria
Haemophilus influenzae 84P28H1 [NECR]
8729
8653
-
Arg
ACG
[ENA]
¡û
>W1910879587
NECS01000051
Gammaproteobacteria
Haemophilus influenzae 84P37H2 [NECS]
2000
1924
-
Arg
ACG
[ENA]
¡û
>W1910879833
NECX01000021
Gammaproteobacteria
Haemophilus influenzae 87P37H1 [NECX]
8729
8653
-
Arg
ACG
[ENA]
¡û
>W1911198809
NRCT01000009
Gammaproteobacteria
Aggregatibacter kilianii Melo68 [NRCT]
7099
7175
+
Arg
ACG
[ENA]
¡û
>W1911199241
NRDC01000003
Gammaproteobacteria
Aggregatibacter aphrophilus CCUG 11575 [NRDC]
21770
21694
-
Arg
ACG
[ENA]
¡û
>W1911753199
QWMD01000012
Gammaproteobacteria
Haemophilus influenzae 60373_NP_Hi1 [QWMD]
22956
22880
-
Arg
ACG
[ENA]
¡û
>W1911753761
QWMP01000004
Gammaproteobacteria
Haemophilus influenzae 60069_NP_Hi2 [QWMP]
8828
8752
-
Arg
ACG
[ENA]
¡û
>W1911753815
QWMQ01000005
Gammaproteobacteria
Haemophilus influenzae 60068_BAL_Hi1 [QWMQ]
8838
8762
-
Arg
ACG
[ENA]
¡û
>W1911753865
QWMR01000004
Gammaproteobacteria
Haemophilus influenzae 60068_NP_Hi3 [QWMR]
8750
8674
-
Arg
ACG
[ENA]
¡û
>W1911775830
QXNM01000031
Gammaproteobacteria
Rodentibacter pneumotropicus Ppn95 [QXNM]
20170
20094
-
Arg
ACG
[ENA]
¡û
>W1810015161
BGMN01000032
Gammaproteobacteria
Haemophilus influenzae 1 [BGMN]
24301
24377
+
Arg
ACG
[ENA]
¡û
>W1810154214
PIZG01000014
Gammaproteobacteria
Haemophilus influenzae Hib66 [PIZG]
8677
8601
-
Arg
ACG
[ENA]
¡û
>W1810578794
QEPY01000004
Gammaproteobacteria
Aggregatibacter aphrophilus C2008003249 [QEPY]
6936
7012
+
Arg
ACG
[ENA]
¡û
>W1810763732
QQBM01000008
Gammaproteobacteria
Haemophilus influenzae M12066 [QQBM]
7276
7200
-
Arg
ACG
[ENA]
¡û
>W1810764043
QQBS01000008
Gammaproteobacteria
Haemophilus influenzae M25147 [QQBS]
29781
29857
+
Arg
ACG
[ENA]
¡û
>W1810771649
QQHK01000008
Gammaproteobacteria
Haemophilus influenzae M09673 [QQHK]
22567
22643
+
Arg
ACG
[ENA]
¡û
>W1810773074
QQIM01000008
Gammaproteobacteria
Haemophilus influenzae M10315 [QQIM]
8912
8836
-
Arg
ACG
[ENA]
¡û
>W1810774368
QQJL01000006
Gammaproteobacteria
Haemophilus influenzae M06151 [QQJL]
87248
87324
+
Arg
ACG
[ENA]
¡û
>W1810774910
QQJW01000002
Gammaproteobacteria
Haemophilus haemolyticus M26161 [QQJW]
240712
240788
+
Arg
ACG
[ENA]
¡û
>W1810775918
QQKP01000007
Gammaproteobacteria
Haemophilus influenzae M11955 [QQKP]
7271
7195
-
Arg
ACG
[ENA]
¡û
>W1810776126
QQKT01000012
Gammaproteobacteria
Haemophilus influenzae M09965 [QQKT]
32150
32226
+
Arg
ACG
[ENA]
¡û
>W1810911601
QVLB01000014
Gammaproteobacteria
Haemophilus influenzae P604-7629 [QVLB]
22431
22507
+
Arg
ACG
[ENA]
¡û
>W1810912160
QVLM01000013
Gammaproteobacteria
Haemophilus influenzae P590-8360 [QVLM]
23444
23520
+
Arg
ACG
[ENA]
¡û
>C151036490
CP008740
Gammaproteobacteria
Haemophilus influenzae 2019 [CP008740]
775576
775500
-
Arg
ACG
[Ensembl]
¡û
>W10110684
ADCF01000001
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D7S-1 [ADCF]
1306625
1306701
+
Arg
ACG
[ENA]
¡û
>W11113121
ADCF01000001
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D7S-1 [ADCF]
1306625
1306701
+
Arg
ACG
[ENA]
¡û
>W1511303551
JPJM01000055
Gammaproteobacteria
Gallibacterium anatis str. Avicor [JPJM]
2540
2616
+
Arg
ACG
[ENA]
¡û
>W11121423
ADOB01000043
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D17P-2 [ADOB]
27450
27526
+
Arg
ACG
[ENA]
¡û
>W1511448593
JUZZ01000100
Gammaproteobacteria
Haemophilus influenzae 614_HPAR [JUZZ]
22799
22875
+
Arg
ACG
[ENA]
¡û
>W1511451646
JVDE01000042
Gammaproteobacteria
Haemophilus influenzae 536_HINF [JVDE]
9464
9388
-
Arg
ACG
[ENA]
¡û
>W1511464401
JVPX01000003
Gammaproteobacteria
Haemophilus parainfluenzae 209_HPAR [JVPX]
186107
186183
+
Arg
ACG
[ENA]
¡û
>W1511466510
JVSA01000038
Gammaproteobacteria
Haemophilus influenzae 156_HINF [JVSA]
10155
10079
-
Arg
ACG
[ENA]
¡û
>W1511476370
JWEN01000052
Gammaproteobacteria
Haemophilus influenzae 1057_HINF [JWEN]
23501
23577
+
Arg
ACG
[ENA]
¡û
>W1511506363
JXMB01000004
Gammaproteobacteria
Haemophilus influenzae Hi378 [JXMB]
20042
20118
+
Arg
ACG
[ENA]
¡û
>W11138961
AEJM01000023
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SC1083 [AEJM]
27444
27520
+
Arg
ACG
[ENA]
¡û
>W11139048
AEJO01000028
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype f str. D18P1 [AEJO]
8658
8582
-
Arg
ACG
[ENA]
¡û
>W1511678386
LFDJ01000020
Gammaproteobacteria
Haemophilus influenzae HI1408 [LFDJ]
31523
31447
-
Arg
ACG
[ENA]
¡û
>W1511678636
LFDP01000002
Gammaproteobacteria
Haemophilus influenzae HI1373 [LFDP]
19680
19604
-
Arg
ACG
[ENA]
¡û
>W1511679662
LFFO01000005
Gammaproteobacteria
Haemophilus influenzae HI1980 [LFFO]
19949
20025
+
Arg
ACG
[ENA]
¡û
>W1511679749
LFFQ01000004
Gammaproteobacteria
Haemophilus influenzae HI2004 [LFFQ]
8766
8690
-
Arg
ACG
[ENA]
¡û
>W1610040341
AZTX01000027
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA269 [AZTX]
6709
6785
+
Arg
ACG
[ENA]
¡û
>W1610294719
FFIH01000012
Gammaproteobacteria
Haemophilus influenzae [FFIH]
22624
22548
-
Arg
ACG
[ENA]
¡û
>W1611029922
LZDP01000012
Gammaproteobacteria
Haemophilus influenzae [LZDP]
19816
19892
+
Arg
ACG
[ENA]
¡û
>W1611041583
LZMY01000016
Gammaproteobacteria
Haemophilus parainfluenzae [LZMY]
221654
221730
+
Arg
ACG
[ENA]
¡û
>W1611041768
LZOX01000017
Gammaproteobacteria
Haemophilus sp. CCUG 66565 [LZOX]
35797
35873
+
Arg
ACG
[ENA]
¡û
>W1611042088
LZPH01000028
Gammaproteobacteria
Haemophilus aegyptius [LZPH]
19233
19157
-
Arg
ACG
[ENA]
¡û
>W1710037486
AZTX01000027
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA269 [AZTX]
6709
6785
+
Arg
ACG
[ENA]
¡û
>W1710295353
FFIH01000012
Gammaproteobacteria
Haemophilus influenzae [FFIH]
22624
22548
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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