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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.215287 (55 seq.)
>W1711744317
MUHR01000030
Alphaproteobacteria
Planktotalea arctica IMCC9565 [MUHR]
5311
5235
-
Pro
GGG
[ENA]
¡û
>WENV180100934
OAOT01015094
[OAOT] marine metagenome; Mesotrophic water
167
91
-
Pro
GGG
[ENA]
¢þ
>WENV180101365
OAOU01042292
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
238
162
-
Pro
GGG
[ENA]
¢þ
>WENV180101532
OAOV01003033
[OAOV] marine metagenome; ENVO:00002010
303
227
-
Pro
GGG
[ENA]
¢þ
>WENV180388025
OBPG01031501
[OBPG] marine metagenome; Sterile flask
407
483
+
Pro
GGG
[ENA]
¢þ
>WENV180590444
OCOT01019539
[OCOT] marine metagenome; ENVO:00002010
212
136
-
Pro
GGG
[ENA]
¢þ
>WENV180636461
OCRF01007605
[OCRF] marine metagenome; niskin bottle
290
366
+
Pro
GGG
[ENA]
¢þ
>WENV181306778
OFIM01010921
[OFIM] marine metagenome; seawater
313
237
-
Pro
GGG
[ENA]
¢þ
>WENV181313910
OFJH01025141
[OFJH] marine metagenome; seawater
454
530
+
Pro
GGG
[ENA]
¢þ
>WENV181322949
OFKV01032511
[OFKV] marine metagenome; sea ice
469
393
-
Pro
GGG
[ENA]
¢þ
>WENV181325030
OFLI01002388
[OFLI] seawater metagenome; seawater
162
86
-
Pro
GGG
[ENA]
¢þ
>WENV181385585
OFRJ01000241
[OFRJ] marine metagenome; seawater
2548
2472
-
Pro
GGG
[ENA]
¢þ
>WENV181391713
OFRT01053628
[OFRT] seawater metagenome; seawater
216
140
-
Pro
GGG
[ENA]
¢þ
>W08011116
ABSH01000025
Alphaproteobacteria
Octadecabacter antarcticus 307 [ABSH]
123948
124024
+
Pro
GGG
[ENA]
¡û
>W08011260
ABSK01000058
Alphaproteobacteria
Octadecabacter arcticus 238 [ABSK]
120415
120491
+
Pro
GGG
[ENA]
¡û
>WENV182548236
OJBV01004867
[OJBV] seawater metagenome; Sea water
245
169
-
Pro
GGG
[ENA]
¢þ
>WENV182558914
OJDN01014207
[OJDN] seawater metagenome; Sea water
897
821
-
Pro
GGG
[ENA]
¢þ
>WENV182571742
OJFK01009277
[OJFK] seawater metagenome; Sea water
899
823
-
Pro
GGG
[ENA]
¢þ
>WENV182583945
OJHF01001401
[OJHF] seawater metagenome; Sea water
3405
3329
-
Pro
GGG
[ENA]
¢þ
>WENV182594460
OJIV01014893
[OJIV] seawater metagenome; Sea water
828
752
-
Pro
GGG
[ENA]
¢þ
>W141290204
JASE01000005
Alphaproteobacteria
Sulfitobacter geojensis MM-124 [JASE]
2500956
2501032
+
Pro
GGG
[ENA]
¡û
>WENV183062496
OLID01024709
[OLID] seawater metagenome; Sea water
800
724
-
Pro
GGG
[ENA]
¢þ
>WENV183065078
OLII01018421
[OLII] seawater metagenome; Sea water
720
644
-
Pro
GGG
[ENA]
¢þ
>WENV183615050
OOEA01040881
[OOEA] marine metagenome; sea ice
330
254
-
Pro
GGG
[ENA]
¢þ
>WENV183616988
OOEE01022942
[OOEE] marine metagenome; sea ice
653
577
-
Pro
GGG
[ENA]
¢þ
>WENV183620077
OOFR01004335
[OOFR] marine metagenome; seawater
955
879
-
Pro
GGG
[ENA]
¢þ
>WENV183621606
OOFU01014432
[OOFU] marine metagenome; sea ice
153
229
+
Pro
GGG
[ENA]
¢þ
>WENV183621717
OOFU01038409
[OOFU] marine metagenome; sea ice
28
104
+
Pro
GGG
[ENA]
¢þ
>WENV183625293
OOGF01009835
[OOGF] marine metagenome; seawater
386
310
-
Pro
GGG
[ENA]
¢þ
>WENV183628311
OOGN01008351
[OOGN] marine metagenome; sea ice
995
919
-
Pro
GGG
[ENA]
¢þ
>WENV183628688
OOGO01007977
[OOGO] marine metagenome; sea ice
1113
1189
+
Pro
GGG
[ENA]
¢þ
>WENV183631098
OOGU01030518
[OOGU] marine metagenome; sea ice
893
817
-
Pro
GGG
[ENA]
¢þ
>WENV170013143
ATLU01000061
[ATLU] bioreactor metagenome; continuous culture bioreactor inoculated with sediment procaryotes from the German
18051
18127
+
Pro
GGG
[ENA]
¢þ
>WENV170327456
CESU01081187
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1421
1345
-
Pro
GGG
[ENA]
¢þ
>WENV170567377
FLMP01000156
[FLMP] seawater metagenome; seawater
16322
16246
-
Pro
GGG
[ENA]
¢þ
>WENV170571830
FLOH01000332
[FLOH] marine metagenome; water
60466
60542
+
Pro
GGG
[ENA]
¢þ
>WENV170704939
LLEN01019195
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
16
92
+
Pro
GGG
[ENA]
¢þ
>WENV170783715
MAAC01018412
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
48148
48072
-
Pro
GGG
[ENA]
¢þ
>WENV170783874
MAAC01019328
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
39023
39099
+
Pro
GGG
[ENA]
¢þ
>WENV170949753
MEHZ011449918
[MEHZ] marine metagenome; marine surface water
815
891
+
Pro
GGG
[ENA]
¢þ
>WENV170950690
MEHZ011511657
[MEHZ] marine metagenome; marine surface water
535
459
-
Pro
GGG
[ENA]
¢þ
>C181068110
CP022540
Alphaproteobacteria
Antarctobacter heliothermus SMS3 [CP022540]
3720180
3720256
+
Pro
GGG
-
¡û
>C181123365
CP025804
Alphaproteobacteria
Sulfitobacter sp. SK012 [CP025804]
1933345
1933269
-
Pro
GGG
-
¡û
>W09111661
ABXE01000012
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2083 HTCC2083 [ABXE]
54428
54352
-
Pro
GGG
[ENA]
¡û
>W1910499863
FXYH01000004
Alphaproteobacteria
Pelagimonas varians CECT 8663 [FXYH]
297415
297491
+
Pro
GGG
[ENA]
¡û
>W1910548468
FZON01000054
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
947
871
-
Pro
GGG
[ENA]
¡û
>W1810471788
QAGK01000006
Alphaproteobacteria
Oceaniglobus ichthyenteri YLY08 [QAGK]
58769
58845
+
Pro
GGG
[ENA]
¡û
>W1810584268
QFAR01000001
Alphaproteobacteria
Pelagicola sp. LXJ1103 [QFAR]
745846
745922
+
Pro
GGG
[ENA]
¡û
>W1810676754
QKMF01000004
Alphaproteobacteria
Pelagimonas varians DSM 23678 [QKMF]
59937
59861
-
Pro
GGG
[ENA]
¡û
>W1810719939
QNQP01000014
Alphaproteobacteria
Roseovarius dicentrarchi YLY04 [QNQP]
34744
34820
+
Pro
GGG
[ENA]
¡û
>W1511479461
JWIE01000079
Alphaproteobacteria
Falsihalocynthiibacter arcticus PAMC 20958 [JWIE]
29478
29402
-
Pro
GGG
[ENA]
¡û
>C161071245
CP014327
Alphaproteobacteria
Falsihalocynthiibacter arcticus PAMC 20958 [CP014327]
3187575
3187499
-
Pro
GGG
[Ensembl]
¡û
>C131005931
CP003740
Alphaproteobacteria
Octadecabacter antarcticus 307 [CP003740]
2740790
2740866
+
Pro
GGG
[Ensembl]
¡û
>C131005972
CP003742
Alphaproteobacteria
Octadecabacter arcticus 238 [CP003742]
2408438
2408514
+
Pro
GGG
[Ensembl]
¡û
>W1710559736
FOMW01000002
Alphaproteobacteria
Sulfitobacter brevis [FOMW]
195351
195427
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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