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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21535 (72 seq.)
>W1711690200
MSEI01000041
Gammaproteobacteria
Idiomarina sp. 5.13 [MSEI]
26586
26496
-
Ser
GCT
[ENA]
¡û
>WENV180358196
OBNP01008480
[OBNP] marine metagenome; seawater
751
661
-
Ser
GCT
[ENA]
¢þ
>W141223721
BAEK01000038
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
103171
103081
-
Ser
GCT
[ENA]
¡û
>W141223774
BAEM01000042
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
100401
100311
-
Ser
GCT
[ENA]
¡û
>W141242090
CAHY01000011
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
39855
39765
-
Ser
GCT
[ENA]
¡û
>WENV182541928
OJAV01000023
[OJAV] seawater metagenome; Sea water
24484
24394
-
Ser
GCT
[ENA]
¢þ
>WENV182541986
OJAV01000158
[OJAV] seawater metagenome; Sea water
12381
12471
+
Ser
GCT
[ENA]
¢þ
>WENV182542324
OJAY01000072
[OJAY] seawater metagenome; Sea water
37648
37738
+
Ser
GCT
[ENA]
¢þ
>WENV182542574
OJAZ01000008
[OJAZ] seawater metagenome; Sea water
141559
141649
+
Ser
GCT
[ENA]
¢þ
>WENV182542665
OJAZ01000404
[OJAZ] seawater metagenome; Sea water
20844
20934
+
Ser
GCT
[ENA]
¢þ
>WENV182543365
OJBB01000001
[OJBB] seawater metagenome; Sea water
50842
50752
-
Ser
GCT
[ENA]
¢þ
>WENV182543538
OJBB01002858
[OJBB] seawater metagenome; Sea water
2482
2572
+
Ser
GCT
[ENA]
¢þ
>WENV182543682
OJBC01000251
[OJBC] seawater metagenome; Sea water
3748
3838
+
Ser
GCT
[ENA]
¢þ
>WENV182547025
OJBR01000186
[OJBR] seawater metagenome; Sea water
21044
20954
-
Ser
GCT
[ENA]
¢þ
>WENV182547123
OJBR01001557
[OJBR] seawater metagenome; Sea water
206
116
-
Ser
GCT
[ENA]
¢þ
>WENV182548809
OJBX01000213
[OJBX] seawater metagenome; Sea water
256
166
-
Ser
GCT
[ENA]
¢þ
>WENV182549848
OJBZ01000122
[OJBZ] seawater metagenome; Sea water
247
157
-
Ser
GCT
[ENA]
¢þ
>WENV182550275
OJBZ01029074
[OJBZ] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182552389
OJCK01000009
[OJCK] seawater metagenome; Sea water
159015
159105
+
Ser
GCT
[ENA]
¢þ
>WENV182552492
OJCK01000600
[OJCK] seawater metagenome; Sea water
4210
4120
-
Ser
GCT
[ENA]
¢þ
>WENV182553200
OJCR01000442
[OJCR] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182554936
OJCY01000036
[OJCY] seawater metagenome; Sea water
43351
43441
+
Ser
GCT
[ENA]
¢þ
>WENV182555818
OJDD01001370
[OJDD] seawater metagenome; Sea water
209
119
-
Ser
GCT
[ENA]
¢þ
>WENV182557075
OJDI01000690
[OJDI] seawater metagenome; Sea water
11911
12001
+
Ser
GCT
[ENA]
¢þ
>WENV182557405
OJDI01028539
[OJDI] seawater metagenome; Sea water
347
437
+
Ser
GCT
[ENA]
¢þ
>WENV182559660
OJDQ01000840
[OJDQ] seawater metagenome; Sea water
10385
10475
+
Ser
GCT
[ENA]
¢þ
>WENV182559798
OJDQ01005374
[OJDQ] seawater metagenome; Sea water
918
828
-
Ser
GCT
[ENA]
¢þ
>WENV182562441
OJDZ01003151
[OJDZ] seawater metagenome; Sea water
3426
3516
+
Ser
GCT
[ENA]
¢þ
>WENV182562462
OJDZ01003746
[OJDZ] seawater metagenome; Sea water
247
157
-
Ser
GCT
[ENA]
¢þ
>WENV182566160
OJEJ01000299
[OJEJ] seawater metagenome; Sea water
167
77
-
Ser
GCT
[ENA]
¢þ
>WENV182566324
OJEJ01014721
[OJEJ] seawater metagenome; Sea water
134
44
-
Ser
GCT
[ENA]
¢þ
>WENV182566790
OJEM01004948
[OJEM] seawater metagenome; Sea water
256
166
-
Ser
GCT
[ENA]
¢þ
>WENV182567668
OJEP01000038
[OJEP] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182571029
OJFG01000069
[OJFG] seawater metagenome; Sea water
46098
46188
+
Ser
GCT
[ENA]
¢þ
>WENV182571117
OJFG01000449
[OJFG] seawater metagenome; Sea water
179
89
-
Ser
GCT
[ENA]
¢þ
>WENV182571981
OJFL01000018
[OJFL] seawater metagenome; Sea water
52789
52699
-
Ser
GCT
[ENA]
¢þ
>WENV182572180
OJFL01000788
[OJFL] seawater metagenome; Sea water
256
166
-
Ser
GCT
[ENA]
¢þ
>WENV182573206
OJFP01000332
[OJFP] seawater metagenome; Sea water
2606
2696
+
Ser
GCT
[ENA]
¢þ
>WENV182574333
OJFR01005005
[OJFR] seawater metagenome; Sea water
2803
2893
+
Ser
GCT
[ENA]
¢þ
>WENV182574613
OJFS01000112
[OJFS] seawater metagenome; Sea water
247
157
-
Ser
GCT
[ENA]
¢þ
>WENV182574806
OJFS01001851
[OJFS] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182578450
OJGO01000020
[OJGO] seawater metagenome; Sea water
87541
87631
+
Ser
GCT
[ENA]
¢þ
>WENV182580827
OJGW01015920
[OJGW] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182582755
OJHC01000010
[OJHC] seawater metagenome; Sea water
187819
187909
+
Ser
GCT
[ENA]
¢þ
>WENV182582813
OJHC01000306
[OJHC] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182584318
OJHG01000005
[OJHG] seawater metagenome; Sea water
149524
149614
+
Ser
GCT
[ENA]
¢þ
>WENV182584348
OJHG01000029
[OJHG] seawater metagenome; Sea water
94743
94653
-
Ser
GCT
[ENA]
¢þ
>WENV182585526
OJHH01049762
[OJHH] seawater metagenome; Sea water
147
57
-
Ser
GCT
[ENA]
¢þ
>WENV182588718
OJHW01008811
[OJHW] seawater metagenome; Sea water
474
384
-
Ser
GCT
[ENA]
¢þ
>WENV182591398
OJIO01000018
[OJIO] seawater metagenome; Sea water
141561
141651
+
Ser
GCT
[ENA]
¢þ
>WENV182592553
OJIR01003558
[OJIR] seawater metagenome; Sea water
3143
3233
+
Ser
GCT
[ENA]
¢þ
>WENV182592694
OJIR01010833
[OJIR] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV183054528
OLGU01000030
[OLGU] seawater metagenome; Sea water
41339
41249
-
Ser
GCT
[ENA]
¢þ
>WENV183055239
OLGX01000284
[OLGX] seawater metagenome; Sea water
1512
1602
+
Ser
GCT
[ENA]
¢þ
>WENV183055421
OLHB01005401
[OLHB] seawater metagenome; Sea water
162
252
+
Ser
GCT
[ENA]
¢þ
>WENV183057264
OLHL01000088
[OLHL] seawater metagenome; Sea water
26214
26124
-
Ser
GCT
[ENA]
¢þ
>WENV183057939
OLHM01027138
[OLHM] seawater metagenome; Sea water
142
52
-
Ser
GCT
[ENA]
¢þ
>WENV183059802
OLHV01005572
[OLHV] seawater metagenome; Sea water
1343
1433
+
Ser
GCT
[ENA]
¢þ
>WENV170931131
MDTG01179278
[MDTG] marine metagenome; seawater
207
117
-
Ser
GCT
[ENA]
¢þ
>C191079988
CP031769
Gammaproteobacteria
Salinimonas sediminis N102 [CP031769]
1108432
1108522
+
Ser
GCT
-
¡û
>C191217631
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
1272583
1272673
+
Ser
GCT
-
¡û
>W1911641200
PYHU01000005
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
308455
308365
-
Ser
GCT
[ENA]
¡û
>W1810426149
PYVY01000004
Gammaproteobacteria
Alteromonas indica IO390401 [PYVY]
24762
24852
+
Ser
GCT
[ENA]
¡û
>C11100857
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
2940025
2939935
-
Ser
GCT
[Ensembl]
¡û
>C11109451
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
1529755
1529845
+
Ser
GCT
[Ensembl]
¡û
>C161051417
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
2780517
2780427
-
Ser
GCT
[Ensembl]
¡û
>C161062076
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
2254825
2254735
-
Ser
GCT
-
¡û
>C161062253
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
2298376
2298286
-
Ser
GCT
-
¡û
>C161062292
CP013933
Gammaproteobacteria
Alteromonas sp. Mac2 [CP013933]
2274066
2273976
-
Ser
GCT
-
¡û
>C161071069
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
2311868
2311778
-
Ser
GCT
-
¡û
>C161086260
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
4553724
4553634
-
Ser
GCT
-
¡û
>C161086297
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
3619996
3620086
+
Ser
GCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK