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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.216373 (29 seq.)
>W131215065
ATUR01000006
Alphaproteobacteria
Novosphingopyxis baekryungensis DSM 16222 [ATUR]
123149
123225
+
Pro
TGG
[ENA]
¡û
>C171072718
CP018097
Alphaproteobacteria
Aurantiacibacter gangjinensis CGMCC 1.15024 [CP018097, CP018098]
2320196
2320120
-
Pro
TGG
-
¡û
>WENV181188719
OEOE01308902
[OEOE] activated sludge metagenome; Activated Sludge
76
152
+
Pro
TGG
[ENA]
¢þ
>WENV182546158
OJBO01001597
[OJBO] seawater metagenome; Sea water
6681
6605
-
Pro
TGG
[ENA]
¢þ
>WENV182549570
OJBY01002411
[OJBY] seawater metagenome; Sea water
3377
3301
-
Pro
TGG
[ENA]
¢þ
>WENV182563807
OJED01000161
[OJED] seawater metagenome; Sea water
2834
2910
+
Pro
TGG
[ENA]
¢þ
>WENV182563856
OJED01000868
[OJED] seawater metagenome; Sea water
3925
4001
+
Pro
TGG
[ENA]
¢þ
>WENV182582045
OJGZ01006750
[OJGZ] seawater metagenome; Sea water
141
217
+
Pro
TGG
[ENA]
¢þ
>WENV183811806
PVBE011616715
[PVBE] marine metagenome; water
620
696
+
Pro
TGG
[ENA]
¢þ
>WENV170126640
CENP01135726
[CENP] marine metagenome genome assembly TARA_030_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
160
236
+
Pro
TGG
[ENA]
¢þ
>WENV170136106
CENV01001812
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
36282
36358
+
Pro
TGG
[ENA]
¢þ
>WENV170290755
CESA01050088
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2513
2589
+
Pro
TGG
[ENA]
¢þ
>WENV170555816
CXWL01002410
[CXWL] groundwater metagenome; biofilm material
21360
21284
-
Pro
TGG
[ENA]
¢þ
>WENV170556647
CXWL01011509
[CXWL] groundwater metagenome; biofilm material
5767
5843
+
Pro
TGG
[ENA]
¢þ
>WENV170556777
CXWL01013546
[CXWL] groundwater metagenome; biofilm material
53139
53063
-
Pro
TGG
[ENA]
¢þ
>WENV170872600
MDTB01220182
[MDTB] marine metagenome; seawater
1151
1075
-
Pro
TGG
[ENA]
¢þ
>WENV170953901
MEHZ011673292
[MEHZ] marine metagenome; marine surface water
88
12
-
Pro
TGG
[ENA]
¢þ
>C181062167
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
1043432
1043356
-
Pro
TGG
-
¡û
>C181068270
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
3405533
3405457
-
Pro
TGG
-
¡û
>W1911767958
QXFL01000002
Alphaproteobacteria
Aurantiacibacter zhengii V18 [QXFL]
52174
52098
-
Pro
TGG
[ENA]
¡û
>W1911767988
QXFM01000020
Alphaproteobacteria
Aurantiacibacter xanthus CCTCC AB 2015396 [QXFM]
2422
2498
+
Pro
TGG
[ENA]
¡û
>W1911798283
QYOS01000021
Alphaproteobacteria
Aurantiacibacter odishensis KCTC 23981 [QYOS]
13207
13131
-
Pro
TGG
[ENA]
¡û
>W1810503366
QBKA01000002
Alphaproteobacteria
Alteripontixanthobacter maritimus HME9302 [QBKA]
1576216
1576292
+
Pro
TGG
[ENA]
¡û
>W1810787257
QRDP01000004
Alphaproteobacteria
Parasphingopyxis lamellibrachiae DSM 26725 [QRDP]
540268
540344
+
Pro
TGG
[ENA]
¡û
>W1511590563
LBHC01000001
Alphaproteobacteria
Aurantiacibacter gangjinensis K7-2 [LBHC]
852719
852643
-
Pro
TGG
[ENA]
¡û
>W1511591744
LBHU01000003
Alphaproteobacteria
Aurantiacibacter marinus HWDM-33 [LBHU]
138809
138733
-
Pro
TGG
[ENA]
¡û
>C161073955
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
1401129
1401205
+
Pro
TGG
[Ensembl]
¡û
>C161098713
CP016545
Alphaproteobacteria
Paraurantiacibacter namhicola JCM 16345 [CP016545]
2030825
2030901
+
Pro
TGG
[Ensembl]
¡û
>WENV078448
AAGA01014771
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
761
683
-
Pro
TGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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