This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.217419 (77 seq.)
>W1711511169
MLCF01000081
Actinomycetota
Mangrovactinospora gilvigrisea gilvigriseus [MLCF]
1229
1153
-
Ala
CGC
[ENA]
¡û
>W1711613613
MOYN01000110
Actinomycetota
Thermomonospora sp. CIF 1 [MOYN]
11868
11944
+
Ala
CGC
[ENA]
¡û
>W131173503
ARHS01000098
Actinomycetota
Streptomyces sp. CNS335 [ARHS]
218312
218386
+
Ala
CGC
[ENA]
¡û
>W131173612
ARHU01000057
Actinomycetota
Streptomyces sp. CNY243 [ARHU]
75115
75189
+
Ala
CGC
[ENA]
¡û
>W131234230
AUKP01000032
Actinomycetota
Streptomyces sp. CNQ865 [AUKP]
12768
12694
-
Ala
CGC
[ENA]
¡û
>W131053549
ANAD01000190
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
25901
25827
-
Ala
CGC
[ENA]
¡û
>W131054294
ANAS01000020
Actinomycetota
Nocardiopsis baichengensis YIM 90130 [ANAS]
263369
263443
+
Ala
CGC
[ENA]
¡û
>W131055160
ANBG01000285
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
5927
5851
-
Ala
CGC
[ENA]
¡û
>W131055219
ANBH01000306
Actinomycetota
Nocardiopsis chromatogenes YIM 90109 [ANBH]
1567
1641
+
Ala
CGC
[ENA]
¡û
>W131170538
ARFO01000024
Actinomycetota
Actinomadura flavalba DSM 45200 [ARFO]
275423
275347
-
Ala
CGC
[ENA]
¡û
>WENV180342249
OBLJ01001895
[OBLJ] soil metagenome; Clay
2649
2727
+
Ala
CGC
[ENA]
¢þ
>WENV181165826
OEIS01208715
[OEIS] soil metagenome; soil
143
69
-
Ala
CGC
[ENA]
¢þ
>WENV181286145
OFGV01000792
[OFGV] soil metagenome; Clay
3632
3710
+
Ala
CGC
[ENA]
¢þ
>WENV181292638
OFHF01002888
[OFHF] soil metagenome; Clay
800
722
-
Ala
CGC
[ENA]
¢þ
>WENV181293340
OFHG01001583
[OFHG] soil metagenome; Clay
6338
6416
+
Ala
CGC
[ENA]
¢þ
>WENV181293865
OFHG01033853
[OFHG] soil metagenome; Clay
902
980
+
Ala
CGC
[ENA]
¢þ
>WENV181294318
OFHH01000083
[OFHH] soil metagenome; Clay
206
128
-
Ala
CGC
[ENA]
¢þ
>WENV181294549
OFHH01008744
[OFHH] soil metagenome; Clay
1084
1162
+
Ala
CGC
[ENA]
¢þ
>WENV181296213
OFHJ01013740
[OFHJ] soil metagenome; Clay
357
283
-
Ala
CGC
[ENA]
¢þ
>WENV181296591
OFHJ01066286
[OFHJ] soil metagenome; Clay
340
266
-
Ala
CGC
[ENA]
¢þ
>WENV181296832
OFHK01000570
[OFHK] soil metagenome; Clay
9939
9861
-
Ala
CGC
[ENA]
¢þ
>WENV181297156
OFHK01013012
[OFHK] soil metagenome; Clay
407
329
-
Ala
CGC
[ENA]
¢þ
>WENV181297751
OFHK01122679
[OFHK] soil metagenome; Clay
112
186
+
Ala
CGC
[ENA]
¢þ
>W141140050
AWOO02000017
Actinomycetota
Actinomadura madurae LIID-AJ290 [AWOO]
140171
140095
-
Ala
CGC
[ENA]
¡û
>W141169406
AXVU01000006
Actinomycetota
Streptomyces sp. CNQ329 [AXVU]
192343
192417
+
Ala
CGC
[ENA]
¡û
>W141218651
AZWL01000014
Actinomycetota
Streptomyces sp. CNH099 [AZWL]
88405
88331
-
Ala
CGC
[ENA]
¡û
>W141219372
AZWZ01000021
Actinomycetota
Streptomyces sp. CNT371 [AZWZ]
86691
86617
-
Ala
CGC
[ENA]
¡û
>W141275791
JADG01000016
Actinomycetota
Actinomadura oligospora ATCC 43269 [JADG]
45729
45805
+
Ala
CGC
[ENA]
¡û
>WENV170564626
CZKT01000083
[CZKT] soil metagenome genome assembly CiPEHR-AK-2010-FBin.14, contig:; soil
5967
6045
+
Ala
CGC
[ENA]
¢þ
>C181072198
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
1312837
1312912
+
Ala
CGC
-
¡û
>C181116721
CP025407
Actinomycetota
Streptomyces sp. CMB-StM0423 [CP025407]
5122318
5122392
+
Ala
CGC
-
¡û
>C191007433
AP019371
Actinomycetota
Actinoplanes sp. OR16 [AP019371]
1677787
1677713
-
Ala
CGC
-
¡û
>C191065088
CP029618
Actinomycetota
Streptomyces sp. WAC 06738 [CP029618]
2942630
2942556
-
Ala
CGC
-
¡û
>W141730172
JNID01000012
Actinomycetota
Streptomyces sp. CNQ-525 [JNID]
182942
183016
+
Ala
CGC
[ENA]
¡û
>W141768680
JOFJ01000008
Actinomycetota
Spirillospora albida [JOFJ]
161734
161810
+
Ala
CGC
[ENA]
¡û
>W09110218
ABUZ01000003
Actinomycetota
Thermomonospora curvata DSM 43183 [ABUZ]
302372
302296
-
Ala
CGC
[ENA]
¡û
>W141820105
JQMQ01000005
Actinomycetota
Phaeacidiphilus oryzae TH49 [JQMQ]
3094680
3094604
-
Ala
CGC
[ENA]
¡û
>W1910548659
FZOR01000014
Actinomycetota
Actinomadura meyerae DSM 44715 [FZOR]
3392
3316
-
Ala
CGC
[ENA]
¡û
>W1911492510
OBDY01000001
Actinomycetota
Actinoplanes atraurantiacus CGMCC 4.6857 [OBDY]
549590
549664
+
Ala
CGC
[ENA]
¡û
>W1911813338
QZEY01000003
Actinomycetota
Bailinhaonella thermotolerans YIM 75507 [QZEY]
280407
280329
-
Ala
CGC
[ENA]
¡û
>W1810356964
PVNI01000004
Actinomycetota
Actinomadura viridilutea DSM 44433 [PVNI]
311617
311543
-
Ala
CGC
[ENA]
¡û
>W1810367956
PVZC01000002
Actinomycetota
Allonocardiopsis opalescens DSM 45601 [PVZC]
66370
66294
-
Ala
CGC
[ENA]
¡û
>W1810570461
QEIM01000038
Actinomycetota
Marinitenerispora sediminis TPS83 [QEIM]
12398
12322
-
Ala
CGC
[ENA]
¡û
>W1810570556
QEIO01000007
Actinomycetota
Marinitenerispora sediminis TPS16 [QEIO]
28029
28105
+
Ala
CGC
[ENA]
¡û
>W1810701620
QMEY01000042
Actinomycetota
Spongiactinospora rosea LHW63015 [QMEY]
32205
32127
-
Ala
CGC
[ENA]
¡û
>W1810861295
QTTT01000001
Actinomycetota
Thermomonospora umbrina DSM 43927 [QTTT]
1866795
1866720
-
Ala
CGC
[ENA]
¡û
>W1810861805
QTUC01000001
Actinomycetota
Thermasporomyces composti DSM 22891 [QTUC]
1301158
1301082
-
Ala
CGC
[ENA]
¡û
>W1810888859
QURH01000011
Actinomycetota
Actinomadura logoneensis NEAU-G17 [QURH]
17692
17767
+
Ala
CGC
[ENA]
¡û
>W1810913824
QVNQ01000004
Actinomycetota
Actinomadura spongiicola LHW52907 [QVNQ]
184067
184142
+
Ala
CGC
[ENA]
¡û
>C151083201
CP011492
Actinomycetota
Streptomyces sp. CNQ-509 [CP011492]
2953329
2953255
-
Ala
CGC
[Ensembl]
¡û
>C10113124
CP001738
Actinomycetota
Thermomonospora curvata DSM 43183 [CP001738]
1020426
1020502
+
Ala
CGC
[Ensembl]
¡û
>W1610067465
BCQP01000028
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
141854
141930
+
Ala
CGC
[ENA]
¡û
>W1610067544
BCQQ01000166
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
197
273
+
Ala
CGC
[ENA]
¡û
>W1610067575
BCQR01000054
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
46717
46793
+
Ala
CGC
[ENA]
¡û
>W1610067697
BCQT01000006
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
694095
694019
-
Ala
CGC
[ENA]
¡û
>W1610067753
BCQU01000010
Actinomycetota
Actinomadura rubrobrunea NBRC 15275 [BCQU]
30374
30300
-
Ala
CGC
[ENA]
¡û
>W1610068549
BCRK01000136
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
8281
8357
+
Ala
CGC
[ENA]
¡û
>W1610068768
BCRO01000099
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
46071
46147
+
Ala
CGC
[ENA]
¡û
>W1610551410
JYIJ01000019
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIJ]
349126
349200
+
Ala
CGC
[ENA]
¡û
>W1610551433
JYIK01000631
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIK]
3003
2929
-
Ala
CGC
[ENA]
¡û
>W1610578238
LAXD01000001
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [LAXD]
647333
647407
+
Ala
CGC
[ENA]
¡û
>W1710064838
BCQP01000028
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
141854
141930
+
Ala
CGC
[ENA]
¡û
>W1710064917
BCQQ01000166
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
197
273
+
Ala
CGC
[ENA]
¡û
>W1710064948
BCQR01000054
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
46717
46793
+
Ala
CGC
[ENA]
¡û
>W1710065070
BCQT01000006
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
694095
694019
-
Ala
CGC
[ENA]
¡û
>W1710065126
BCQU01000010
Actinomycetota
Actinomadura rubrobrunea NBRC 15275 [BCQU]
30374
30300
-
Ala
CGC
[ENA]
¡û
>W1710065922
BCRK01000136
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
8281
8357
+
Ala
CGC
[ENA]
¡û
>W1710066141
BCRO01000099
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
46071
46147
+
Ala
CGC
[ENA]
¡û
>W1710516351
FNCN01000012
Actinomycetota
Sinosporangium album [FNCN]
21174
21250
+
Ala
CGC
[ENA]
¡û
>W1710526589
FNKK01000002
Actinomycetota
Thermostaphylospora chromogena [FNKK]
968670
968594
-
Ala
CGC
[ENA]
¡û
>W1710539643
FNVO01000032
Actinomycetota
Thermomonospora echinospora [FNVO]
45750
45826
+
Ala
CGC
[ENA]
¡û
>W1710561031
FONV01000012
Actinomycetota
Actinoplanes philippinensis [FONV]
355325
355401
+
Ala
CGC
[ENA]
¡û
>W1710570685
FOVH01000015
Actinomycetota
Actinomadura madurae [FOVH]
190169
190093
-
Ala
CGC
[ENA]
¡û
>W1710600738
FUWS01000012
Actinomycetota
Marinactinospora thermotolerans DSM 45154 [FUWS]
204482
204406
-
Ala
CGC
[ENA]
¡û
>W1710661683
JYIJ01000019
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIJ]
349126
349200
+
Ala
CGC
[ENA]
¡û
>W1710661706
JYIK01000631
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIK]
3003
2929
-
Ala
CGC
[ENA]
¡û
>W1710697111
LAXD01000001
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [LAXD]
647333
647407
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK