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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218001 (146 seq.)
>W1711096463
LTHT01000227
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
28917
28834
-
Leu
TAG
[ENA]
¡û
>W1711096473
LTHT01000312
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
64
147
+
Leu
TAG
[ENA]
¡û
>WENV180154291
OAUS01076451
[OAUS] human gut metagenome; faeces
12
95
+
Leu
TAG
[ENA]
¢þ
>WENV180433405
OBWJ01003655
[OBWJ] human gut metagenome; faeces
59
142
+
Leu
TAG
[ENA]
¢þ
>WENV181047518
ODXZ01012595
[ODXZ] human metagenome; G_DNA_Stool
699
616
-
Leu
TAG
[ENA]
¢þ
>WENV181363359
OFOU01000167
[OFOU] human gut metagenome; human gut
43008
43091
+
Leu
TAG
[ENA]
¢þ
>WENV181363535
OFOU01000578
[OFOU] human gut metagenome; human gut
23132
23049
-
Leu
TAG
[ENA]
¢þ
>WENV181428343
OGCV01000157
[OGCV] metagenome; Human gut stool
330
413
+
Leu
TAG
[ENA]
¢þ
>WENV181428882
OGCW01001268
[OGCW] metagenome; Human gut stool
85
2
-
Leu
TAG
[ENA]
¢þ
>WENV181438612
OGDJ01000766
[OGDJ] metagenome; Human gut stool
16185
16102
-
Leu
TAG
[ENA]
¢þ
>WENV181439009
OGDL01000028
[OGDL] metagenome; Human gut stool
41519
41436
-
Leu
TAG
[ENA]
¢þ
>WENV181439087
OGDL01000213
[OGDL] metagenome; Human gut stool
5514
5597
+
Leu
TAG
[ENA]
¢þ
>WENV181446217
OGDT01000099
[OGDT] metagenome; Human gut stool
20500
20417
-
Leu
TAG
[ENA]
¢þ
>WENV181453501
OGEB01022194
[OGEB] metagenome; Human gut stool
92
175
+
Leu
TAG
[ENA]
¢þ
>WENV181454407
OGED01001323
[OGED] metagenome; Human gut stool
689
606
-
Leu
TAG
[ENA]
¢þ
>WENV181457830
OGEI01028365
[OGEI] metagenome; Human gut stool
442
359
-
Leu
TAG
[ENA]
¢þ
>WENV181459386
OGEK01033379
[OGEK] metagenome; Human gut stool
84
1
-
Leu
TAG
[ENA]
¢þ
>WENV181460993
OGEM01000134
[OGEM] metagenome; Human gut stool
24008
23925
-
Leu
TAG
[ENA]
¢þ
>WENV181467202
OGER01001057
[OGER] metagenome; Human gut stool
23916
23833
-
Leu
TAG
[ENA]
¢þ
>WENV181472346
OGEZ01000717
[OGEZ] metagenome; Human gut stool
59
142
+
Leu
TAG
[ENA]
¢þ
>WENV181474143
OGFC01002198
[OGFC] metagenome; Human gut stool
8722
8639
-
Leu
TAG
[ENA]
¢þ
>WENV181474257
OGFC01004347
[OGFC] metagenome; Human gut stool
3455
3372
-
Leu
TAG
[ENA]
¢þ
>WENV181475446
OGFE01000237
[OGFE] metagenome; Human gut stool
18391
18474
+
Leu
TAG
[ENA]
¢þ
>WENV181475612
OGFE01000737
[OGFE] metagenome; Human gut stool
4764
4847
+
Leu
TAG
[ENA]
¢þ
>WENV181483316
OGFK01002388
[OGFK] metagenome; Human gut stool
2258
2341
+
Leu
TAG
[ENA]
¢þ
>WENV181484001
OGFL01000177
[OGFL] metagenome; Human gut stool
27909
27992
+
Leu
TAG
[ENA]
¢þ
>WENV181484181
OGFL01000722
[OGFL] metagenome; Human gut stool
23919
23836
-
Leu
TAG
[ENA]
¢þ
>WENV181498421
OGGF01001885
[OGGF] metagenome; Human gut stool
3785
3868
+
Leu
TAG
[ENA]
¢þ
>WENV181507708
OGGP01000486
[OGGP] metagenome; Human gut stool
2167
2250
+
Leu
TAG
[ENA]
¢þ
>WENV181518491
OGHA01025126
[OGHA] metagenome; Human gut stool
217
300
+
Leu
TAG
[ENA]
¢þ
>WENV181524793
OGHI01001160
[OGHI] metagenome; Human gut stool
10974
10891
-
Leu
TAG
[ENA]
¢þ
>WENV181533701
OGHR01020262
[OGHR] metagenome; Human gut stool
515
432
-
Leu
TAG
[ENA]
¢þ
>WENV181536041
OGHV01001809
[OGHV] metagenome; Human gut stool
11029
10946
-
Leu
TAG
[ENA]
¢þ
>WENV181537677
OGHX01000199
[OGHX] metagenome; Human gut stool
23916
23833
-
Leu
TAG
[ENA]
¢þ
>WENV181539926
OGIA01001032
[OGIA] metagenome; Human gut stool
22276
22193
-
Leu
TAG
[ENA]
¢þ
>WENV181551036
OGIN01000463
[OGIN] metagenome; Human gut stool
11998
11915
-
Leu
TAG
[ENA]
¢þ
>WENV181551079
OGIN01000630
[OGIN] metagenome; Human gut stool
5515
5598
+
Leu
TAG
[ENA]
¢þ
>WENV181552532
OGIO01009839
[OGIO] metagenome; Human gut stool
878
961
+
Leu
TAG
[ENA]
¢þ
>WENV181557343
OGIV01009460
[OGIV] metagenome; Human gut stool
1575
1658
+
Leu
TAG
[ENA]
¢þ
>WENV181560466
OGJC01000269
[OGJC] metagenome; Human gut stool
39406
39489
+
Leu
TAG
[ENA]
¢þ
>WENV181561432
OGJD01002385
[OGJD] metagenome; Human gut stool
6241
6158
-
Leu
TAG
[ENA]
¢þ
>WENV181563130
OGJG01002425
[OGJG] metagenome; Human gut stool
5514
5597
+
Leu
TAG
[ENA]
¢þ
>WENV181567185
OGJJ01002060
[OGJJ] metagenome; Human gut stool
13674
13591
-
Leu
TAG
[ENA]
¢þ
>WENV181568613
OGJK01003953
[OGJK] metagenome; Human gut stool
5556
5473
-
Leu
TAG
[ENA]
¢þ
>WENV181569580
OGJL01012281
[OGJL] metagenome; Human gut stool
625
542
-
Leu
TAG
[ENA]
¢þ
>WENV181569709
OGJM01000115
[OGJM] metagenome; Human gut stool
23931
23848
-
Leu
TAG
[ENA]
¢þ
>WENV181570209
OGJN01000106
[OGJN] metagenome; Human gut stool
66495
66578
+
Leu
TAG
[ENA]
¢þ
>WENV181570466
OGJN01000825
[OGJN] metagenome; Human gut stool
14124
14041
-
Leu
TAG
[ENA]
¢þ
>WENV181573594
OGJR01022628
[OGJR] metagenome; Human gut stool
584
667
+
Leu
TAG
[ENA]
¢þ
>WENV181574139
OGJS01007893
[OGJS] metagenome; Human gut stool
316
399
+
Leu
TAG
[ENA]
¢þ
>WENV181588490
OGKI01002325
[OGKI] metagenome; Human gut stool
724
641
-
Leu
TAG
[ENA]
¢þ
>WENV181588975
OGKK01000175
[OGKK] metagenome; Human gut stool
166
249
+
Leu
TAG
[ENA]
¢þ
>WENV181589498
OGKL01002304
[OGKL] metagenome; Human gut stool
516
599
+
Leu
TAG
[ENA]
¢þ
>WENV181590351
OGKN01002085
[OGKN] metagenome; Human gut stool
624
707
+
Leu
TAG
[ENA]
¢þ
>WENV181599584
OGLC01000647
[OGLC] metagenome; Human gut stool
59
142
+
Leu
TAG
[ENA]
¢þ
>WENV181608618
OGLN01000734
[OGLN] metagenome; Human gut stool
3036
2953
-
Leu
TAG
[ENA]
¢þ
>WENV181619427
OGMD01033262
[OGMD] metagenome; Human gut stool
78
161
+
Leu
TAG
[ENA]
¢þ
>WENV181623144
OGMH01004026
[OGMH] metagenome; Human gut stool
531
448
-
Leu
TAG
[ENA]
¢þ
>WENV181623516
OGMI01000675
[OGMI] metagenome; Human gut stool
11797
11714
-
Leu
TAG
[ENA]
¢þ
>WENV181627722
OGMN01004198
[OGMN] metagenome; Human gut stool
4337
4420
+
Leu
TAG
[ENA]
¢þ
>WENV181629896
OGMP01010034
[OGMP] metagenome; Human gut stool
1977
2060
+
Leu
TAG
[ENA]
¢þ
>WENV181632608
OGMT01043773
[OGMT] metagenome; Human gut stool
340
423
+
Leu
TAG
[ENA]
¢þ
>WENV181636202
OGMZ01000931
[OGMZ] metagenome; Human gut stool
59
142
+
Leu
TAG
[ENA]
¢þ
>WENV181644165
OGNL01003287
[OGNL] metagenome; Human gut stool
524
441
-
Leu
TAG
[ENA]
¢þ
>WENV181649446
OGNS01000788
[OGNS] metagenome; Human gut stool
14057
13974
-
Leu
TAG
[ENA]
¢þ
>WENV181651971
OGNW01000224
[OGNW] metagenome; Human gut stool
34225
34308
+
Leu
TAG
[ENA]
¢þ
>WENV181794542
OGRS01000870
[OGRS] human gut metagenome; faeces
23096
23013
-
Leu
TAG
[ENA]
¢þ
>WENV181819836
OGUB01007697
[OGUB] metagenome; Human gut stool
56
139
+
Leu
TAG
[ENA]
¢þ
>WENV181820506
OGUD01000047
[OGUD] metagenome; Human gut stool
23918
23835
-
Leu
TAG
[ENA]
¢þ
>WENV181820596
OGUD01000138
[OGUD] metagenome; Human gut stool
41521
41438
-
Leu
TAG
[ENA]
¢þ
>WENV181822352
OGUG01001176
[OGUG] metagenome; Human gut stool
10190
10107
-
Leu
TAG
[ENA]
¢þ
>WENV181823417
OGUJ01000689
[OGUJ] metagenome; Human gut stool
59
142
+
Leu
TAG
[ENA]
¢þ
>WENV181860172
OGWR01000165
[OGWR] human gut metagenome; faeces
33898
33981
+
Leu
TAG
[ENA]
¢þ
>WENV181878125
OGXE01001067
[OGXE] human gut metagenome; faeces
1331
1414
+
Leu
TAG
[ENA]
¢þ
>WENV181892112
OGXP01000366
[OGXP] human gut metagenome; faeces
30057
30140
+
Leu
TAG
[ENA]
¢þ
>WENV181892273
OGXP01000800
[OGXP] human gut metagenome; faeces
9296
9213
-
Leu
TAG
[ENA]
¢þ
>WENV181894123
OGXQ01024745
[OGXQ] human gut metagenome; faeces
822
905
+
Leu
TAG
[ENA]
¢þ
>WENV181899228
OGXU01000261
[OGXU] human gut metagenome; faeces
21326
21243
-
Leu
TAG
[ENA]
¢þ
>WENV181905456
OGXY01000245
[OGXY] human gut metagenome; faeces
31609
31692
+
Leu
TAG
[ENA]
¢þ
>WENV181931956
OGYQ01016390
[OGYQ] human gut metagenome; faeces
712
629
-
Leu
TAG
[ENA]
¢þ
>WENV181933686
OGYS01033868
[OGYS] human gut metagenome; faeces
114
197
+
Leu
TAG
[ENA]
¢þ
>WENV181946694
OGZD01000075
[OGZD] human gut metagenome; faeces
90419
90502
+
Leu
TAG
[ENA]
¢þ
>WENV181946820
OGZD01000220
[OGZD] human gut metagenome; faeces
28295
28378
+
Leu
TAG
[ENA]
¢þ
>WENV181947952
OGZE01000068
[OGZE] human gut metagenome; faeces
51059
51142
+
Leu
TAG
[ENA]
¢þ
>WENV181948004
OGZE01000162
[OGZE] human gut metagenome; faeces
30499
30582
+
Leu
TAG
[ENA]
¢þ
>WENV181952907
OGZI01001435
[OGZI] human gut metagenome; faeces
59
142
+
Leu
TAG
[ENA]
¢þ
>WENV181958977
OGZM01001027
[OGZM] human gut metagenome; faeces
4433
4350
-
Leu
TAG
[ENA]
¢þ
>WENV181958996
OGZM01001099
[OGZM] human gut metagenome; faeces
1490
1573
+
Leu
TAG
[ENA]
¢þ
>WENV181960239
OGZN01030007
[OGZN] human gut metagenome; faeces
96
179
+
Leu
TAG
[ENA]
¢þ
>WENV181974320
OHAB01011619
[OHAB] human gut metagenome; faeces
1485
1402
-
Leu
TAG
[ENA]
¢þ
>WENV181986832
OHAM01004846
[OHAM] human gut metagenome; faeces
5699
5616
-
Leu
TAG
[ENA]
¢þ
>WENV181994066
OHAS01009813
[OHAS] human gut metagenome; faeces
3937
3854
-
Leu
TAG
[ENA]
¢þ
>WENV182002860
OHBA01022180
[OHBA] human gut metagenome; feces
386
303
-
Leu
TAG
[ENA]
¢þ
>WENV182064588
OHEZ01002384
[OHEZ] human gut metagenome; feces
1734
1817
+
Leu
TAG
[ENA]
¢þ
>WENV182124451
OHJQ01048461
[OHJQ] human gut metagenome; feces
59
142
+
Leu
TAG
[ENA]
¢þ
>WENV182146376
OHKZ01022420
[OHKZ] human gut metagenome; feces
586
503
-
Leu
TAG
[ENA]
¢þ
>WENV182227585
OHRG01001644
[OHRG] human gut metagenome; feces
495
412
-
Leu
TAG
[ENA]
¢þ
>WENV182503755
OIUQ01002653
[OIUQ] human gut metagenome; human gut
1056
1139
+
Leu
TAG
[ENA]
¢þ
>WENV182504312
OIUT01007396
[OIUT] human gut metagenome; human gut
603
520
-
Leu
TAG
[ENA]
¢þ
>WENV182866755
OKRR01001161
[OKRR] human gut metagenome; faeces
21915
21998
+
Leu
TAG
[ENA]
¢þ
>WENV182891654
OKSH01002580
[OKSH] human gut metagenome; faeces
10915
10832
-
Leu
TAG
[ENA]
¢þ
>WENV182905303
OKTB01016147
[OKTB] human gut metagenome; feces
218
301
+
Leu
TAG
[ENA]
¢þ
>WENV182915875
OKTS01004179
[OKTS] human gut metagenome; feces
53
136
+
Leu
TAG
[ENA]
¢þ
>WENV183014910
OLEM01004483
[OLEM] human gut metagenome; human gut
964
881
-
Leu
TAG
[ENA]
¢þ
>WENV183290281
OLSH01000086
[OLSH] human gut metagenome; faeces
64532
64615
+
Leu
TAG
[ENA]
¢þ
>WENV183290532
OLSH01000535
[OLSH] human gut metagenome; faeces
2819
2902
+
Leu
TAG
[ENA]
¢þ
>WENV183548854
OOAY01002399
[OOAY] human gut metagenome; human gut
3
86
+
Leu
TAG
[ENA]
¢þ
>WENV183576930
OOCJ01002882
[OOCJ] human gut metagenome; human gut
2871
2954
+
Leu
TAG
[ENA]
¢þ
>WENV183576970
OOCJ01003680
[OOCJ] human gut metagenome; human gut
777
860
+
Leu
TAG
[ENA]
¢þ
>WENV183581316
OOCN01016880
[OOCN] human gut metagenome; human gut
700
783
+
Leu
TAG
[ENA]
¢þ
>WENV183760936
PPYE01245718
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
674
591
-
Leu
TAG
[ENA]
¢þ
>WENV183764093
PPYE01314331
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2
85
+
Leu
TAG
[ENA]
¢þ
>C181003896
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
175690
175773
+
Leu
TAG
-
¡û
>C181003917
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
1192012
1192095
+
Leu
TAG
-
¡û
>C181160921
CP028102
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [CP028102]
632550
632633
+
Leu
TAG
-
¡û
>C181160979
CP028102
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [CP028102]
2252
2169
-
Leu
TAG
-
¡û
>C181161002
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
2226353
2226436
+
Leu
TAG
-
¡û
>C181161021
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
924809
924726
-
Leu
TAG
-
¡û
>C181161060
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
2460890
2460973
+
Leu
TAG
-
¡û
>C181161079
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
1222991
1222908
-
Leu
TAG
-
¡û
>C181216756
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
909862
909945
+
Leu
TAG
-
¡û
>C181216775
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
3211049
3210966
-
Leu
TAG
-
¡û
>C191210222
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
3205485
3205568
+
Leu
TAG
-
¡û
>C191210247
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
1904407
1904324
-
Leu
TAG
-
¡û
>C191219284
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
3066882
3066799
-
Leu
TAG
-
¡û
>W09118513
ACDB01000024
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [ACDB]
31744
31827
+
Leu
TAG
[ENA]
¡û
>W09118530
ACDB01000050
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [ACDB]
87919
88002
+
Leu
TAG
[ENA]
¡û
>W09118778
ACDH01000038
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
5320
5403
+
Leu
TAG
[ENA]
¡û
>W09118808
ACDH01000075
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
63196
63279
+
Leu
TAG
[ENA]
¡û
>W09125178
ACIE01000037
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
43523
43606
+
Leu
TAG
[ENA]
¡û
>W09125191
ACIE01000078
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
36596
36679
+
Leu
TAG
[ENA]
¡û
>W1910194491
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
1088085
1088002
-
Leu
TAG
[ENA]
¡û
>W1910194507
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
556985
556902
-
Leu
TAG
[ENA]
¡û
>W1810790034
QRHI01000011
Fusobacteriota
Fusobacterium mortiferum AM25-18LB [QRHI]
33151
33234
+
Leu
TAG
[ENA]
¡û
>W1810790044
QRHI01000019
Fusobacteriota
Fusobacterium mortiferum AM25-18LB [QRHI]
23914
23831
-
Leu
TAG
[ENA]
¡û
>W1810790193
QRHL01000028
Fusobacteriota
Fusobacterium mortiferum AM25-1 [QRHL]
23901
23818
-
Leu
TAG
[ENA]
¡û
>W1810791350
QRIG01000012
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
26717
26800
+
Leu
TAG
[ENA]
¡û
>W1810791371
QRIG01000033
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
31012
30929
-
Leu
TAG
[ENA]
¡û
>W1810818387
QSDE01000011
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
34789
34706
-
Leu
TAG
[ENA]
¡û
>W1810818400
QSDE01000013
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
73739
73656
-
Leu
TAG
[ENA]
¡û
>W1810832231
QSOW01000019
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
21042
20959
-
Leu
TAG
[ENA]
¡û
>W1810839561
QSTZ01000006
Fusobacteriota
Fusobacterium mortiferum OM06-15BH [QSTZ]
92859
92942
+
Leu
TAG
[ENA]
¡û
>W1810839572
QSTZ01000013
Fusobacteriota
Fusobacterium mortiferum OM06-15BH [QSTZ]
33702
33785
+
Leu
TAG
[ENA]
¡û
>W121021744
AGWJ01000034
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
98881
98798
-
Leu
TAG
[ENA]
¡û
>W121021772
AGWJ01000062
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
35288
35205
-
Leu
TAG
[ENA]
¡û
>WENV085118
BABB01004899
Gut microbiome of Human (healthy human sample In-A, Adult, Male)
1480
1395
-
Leu
TAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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