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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218116 (24 seq.)
>W1710891828
LNDB01000020
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
1303
1220
-
Tyr
GTA
[ENA]
¡û
>W1710891841
LNDB01000023
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
756
673
-
Tyr
GTA
[ENA]
¡û
>W1710927089
LOEZ01000036
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
33505
33422
-
Tyr
GTA
[ENA]
¡û
>W1711342442
MCHF01000012
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
24718
24801
+
Tyr
GTA
[ENA]
¡û
>W131162519
AQYY01000004
Bacillota
Dehalobacter sp. FTH1 [AQYY]
268851
268768
-
Tyr
GTA
[ENA]
¡û
>WENV180345898
OBLN01010541
[OBLN] sediment metagenome; sediment
77
160
+
Tyr
GTA
[ENA]
¢þ
>W141088276
AUUR01000025
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
75219
75136
-
Tyr
GTA
[ENA]
¡û
>W141246553
CANE01000005
Bacillota
Dehalobacter restrictus E1 [CANE]
47405
47488
+
Tyr
GTA
[ENA]
¡û
>W141246609
CANF01000026
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
47404
47487
+
Tyr
GTA
[ENA]
¡û
>WENV170658836
JUEG02001172
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
89
172
+
Tyr
GTA
[ENA]
¢þ
>WENV170659027
JXWO01000083
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
18261
18344
+
Tyr
GTA
[ENA]
¢þ
>C141011732
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
480178
480261
+
Tyr
GTA
[Ensembl]
¡û
>W1910647156
LXPC01000009
Bacillota
Dehalobacter sp. MCB1 [LXPC]
30556
30639
+
Tyr
GTA
[ENA]
¡û
>W1911608692
PNXX01000006
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
30467
30550
+
Tyr
GTA
[ENA]
¡û
>W1911613565
POSF01000019
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
154344
154261
-
Tyr
GTA
[ENA]
¡û
>C121005986
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
2917477
2917394
-
Tyr
GTA
[Ensembl]
¡û
>W121010369
AGJE01000018
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
2372
2455
+
Tyr
GTA
[ENA]
¡û
>C131003234
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1739675
1739758
+
Tyr
GTA
[Ensembl]
¡û
>C131003250
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1805137
1805220
+
Tyr
GTA
[Ensembl]
¡û
>C131008556
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
1920037
1919954
-
Tyr
GTA
[Ensembl]
¡û
>C131008607
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
1949816
1949733
-
Tyr
GTA
[Ensembl]
¡û
>W1610752193
LNDB01000020
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
1303
1220
-
Tyr
GTA
[ENA]
¡û
>W1610752206
LNDB01000023
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
756
673
-
Tyr
GTA
[ENA]
¡û
>W1610784631
LOEZ01000036
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
33505
33422
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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