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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218122 (91 seq.)
>W1711048311
LRPO01000021
Actinomycetota
Bifidobacterium bifidum [LRPO]
19930
20013
+
Leu
TAA
[ENA]
¡û
>W1711082640
LSUL01000001
Actinomycetota
Bifidobacterium bifidum [LSUL]
76799
76716
-
Leu
TAA
[ENA]
¡û
>W1711577697
MNQB01000003
Actinomycetota
Bifidobacterium bifidum [MNQB]
17414
17331
-
Leu
TAA
[ENA]
¡û
>WENV180127754
OATA01004438
[OATA] human gut metagenome; faeces
1151
1233
+
Leu
TAA
[ENA]
¢þ
>WENV180132163
OATH01001848
[OATH] human gut metagenome; faeces
3159
3077
-
Leu
TAA
[ENA]
¢þ
>WENV180136534
OATN01000061
[OATN] human gut metagenome; faeces
3958
4040
+
Leu
TAA
[ENA]
¢þ
>WENV180136941
OATO01000031
[OATO] human gut metagenome; faeces
47777
47695
-
Leu
TAA
[ENA]
¢þ
>WENV180142084
OATV01001084
[OATV] human gut metagenome; faeces
3148
3066
-
Leu
TAA
[ENA]
¢þ
>WENV180142539
OATW01000790
[OATW] human gut metagenome; faeces
3168
3086
-
Leu
TAA
[ENA]
¢þ
>WENV180171377
OAVW01000447
[OAVW] human gut metagenome; faeces
3983
4065
+
Leu
TAA
[ENA]
¢þ
>WENV180172346
OAVX01001368
[OAVX] human gut metagenome; faeces
2987
3069
+
Leu
TAA
[ENA]
¢þ
>WENV180195916
OAZZ01003726
[OAZZ] human gut metagenome; faeces
122
204
+
Leu
TAA
[ENA]
¢þ
>WENV180409519
OBUU01002552
[OBUU] human gut metagenome; faeces
687
605
-
Leu
TAA
[ENA]
¢þ
>WENV180412340
OBVA01000824
[OBVA] human gut metagenome; faeces
1612
1694
+
Leu
TAA
[ENA]
¢þ
>WENV180414609
OBVD01000130
[OBVD] human gut metagenome; faeces
79848
79766
-
Leu
TAA
[ENA]
¢þ
>WENV180418961
OBVL01003750
[OBVL] human gut metagenome; faeces
520
438
-
Leu
TAA
[ENA]
¢þ
>WENV180419247
OBVM01000547
[OBVM] human gut metagenome; faeces
10590
10508
-
Leu
TAA
[ENA]
¢þ
>WENV180441603
OBWW01000657
[OBWW] human gut metagenome; faeces
12656
12738
+
Leu
TAA
[ENA]
¢þ
>WENV180445604
OBXA01009748
[OBXA] human gut metagenome; faeces
1613
1531
-
Leu
TAA
[ENA]
¢þ
>WENV180455310
OBXO01001187
[OBXO] human gut metagenome; faeces
1438
1520
+
Leu
TAA
[ENA]
¢þ
>WENV180459575
OBXX01000576
[OBXX] human gut metagenome; faeces
4008
4090
+
Leu
TAA
[ENA]
¢þ
>WENV180460894
OBXZ01002371
[OBXZ] human gut metagenome; faeces
1852
1934
+
Leu
TAA
[ENA]
¢þ
>WENV180465059
OBYE01000278
[OBYE] human gut metagenome; faeces
3993
4075
+
Leu
TAA
[ENA]
¢þ
>WENV180473664
OBYR01000892
[OBYR] human gut metagenome; faeces
12953
12871
-
Leu
TAA
[ENA]
¢þ
>WENV180474998
OBYU01000038
[OBYU] human gut metagenome; faeces
2987
3069
+
Leu
TAA
[ENA]
¢þ
>WENV180489423
OBZS01000167
[OBZS] human gut metagenome; faeces
10690
10608
-
Leu
TAA
[ENA]
¢þ
>WENV180492070
OBZW01000231
[OBZW] human gut metagenome; faeces
9011
8929
-
Leu
TAA
[ENA]
¢þ
>WENV180493464
OBZZ01000023
[OBZZ] human gut metagenome; faeces
37662
37744
+
Leu
TAA
[ENA]
¢þ
>WENV180495698
OCAB01000390
[OCAB] human gut metagenome; faeces
2557
2639
+
Leu
TAA
[ENA]
¢þ
>WENV180496618
OCAD01011913
[OCAD] human gut metagenome; faeces
640
722
+
Leu
TAA
[ENA]
¢þ
>WENV180505069
OCAO01001443
[OCAO] human gut metagenome; faeces
295
213
-
Leu
TAA
[ENA]
¢þ
>W08010132
ABQP01000009
Actinomycetota
Bifidobacterium bifidum NCIMB 41171 [ABQP]
152218
152301
+
Leu
TAA
[ENA]
¡û
>W141143961
AWSW01000030
Actinomycetota
Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 [AWSW]
174466
174549
+
Leu
TAA
[ENA]
¡û
>WENV181671792
OGON01006129
[OGON] human gut metagenome; faeces
2090
2008
-
Leu
TAA
[ENA]
¢þ
>WENV181705737
OGPK01025814
[OGPK] human gut metagenome; faeces
771
853
+
Leu
TAA
[ENA]
¢þ
>WENV181714900
OGPR01009434
[OGPR] human gut metagenome; faeces
2557
2639
+
Leu
TAA
[ENA]
¢þ
>WENV181722445
OGPV01066800
[OGPV] human gut metagenome; faeces
68
150
+
Leu
TAA
[ENA]
¢þ
>WENV181723333
OGPW01004037
[OGPW] human gut metagenome; faeces
3787
3869
+
Leu
TAA
[ENA]
¢þ
>WENV181747441
OGQN01032225
[OGQN] human gut metagenome; faeces
773
855
+
Leu
TAA
[ENA]
¢þ
>WENV181762212
OGQW01059731
[OGQW] human gut metagenome; faeces
85
3
-
Leu
TAA
[ENA]
¢þ
>WENV181803557
OGSD01022946
[OGSD] human gut metagenome; faeces
827
909
+
Leu
TAA
[ENA]
¢þ
>WENV181829781
OGUN01062772
[OGUN] human gut metagenome; faeces
134
216
+
Leu
TAA
[ENA]
¢þ
>WENV181898738
OGXT01012065
[OGXT] human gut metagenome; faeces
1380
1462
+
Leu
TAA
[ENA]
¢þ
>WENV182180065
OHNN01029190
[OHNN] human gut metagenome; feces
389
471
+
Leu
TAA
[ENA]
¢þ
>WENV182394612
OIEJ01000096
[OIEJ] human gut metagenome; human gut
33935
34017
+
Leu
TAA
[ENA]
¢þ
>WENV182686816
OJNZ01047073
[OJNZ] human gut metagenome; human gut
517
599
+
Leu
TAA
[ENA]
¢þ
>WENV182805092
OJVC01000033
[OJVC] human gut metagenome; human gut
4085
4003
-
Leu
TAA
[ENA]
¢þ
>WENV182805391
OJVE01000157
[OJVE] human gut metagenome; human gut
2778
2860
+
Leu
TAA
[ENA]
¢þ
>WENV182950757
OKVT01000017
[OKVT] human gut metagenome; human gut
125730
125812
+
Leu
TAA
[ENA]
¢þ
>WENV183083390
OLJB01067316
[OLJB] human gut metagenome; human gut
117
35
-
Leu
TAA
[ENA]
¢þ
>WENV183100377
OLNG01000005
[OLNG] human gut metagenome; faeces
59213
59131
-
Leu
TAA
[ENA]
¢þ
>WENV183133524
OLOC01000133
[OLOC] human gut metagenome; faeces
49165
49083
-
Leu
TAA
[ENA]
¢þ
>WENV183159661
OLOU01006321
[OLOU] human gut metagenome; faeces
993
1075
+
Leu
TAA
[ENA]
¢þ
>WENV183182265
OLPK01000109
[OLPK] human gut metagenome; faeces
44832
44914
+
Leu
TAA
[ENA]
¢þ
>WENV183209349
OLQB01041778
[OLQB] human gut metagenome; faeces
432
514
+
Leu
TAA
[ENA]
¢þ
>WENV183215049
OLQG01000070
[OLQG] human gut metagenome; faeces
82725
82643
-
Leu
TAA
[ENA]
¢þ
>WENV183231419
OLQU01000054
[OLQU] human gut metagenome; faeces
70964
71046
+
Leu
TAA
[ENA]
¢þ
>WENV183259684
OLRO01011457
[OLRO] human gut metagenome; faeces
2517
2435
-
Leu
TAA
[ENA]
¢þ
>WENV183265262
OLRS01003857
[OLRS] human gut metagenome; faeces
3640
3558
-
Leu
TAA
[ENA]
¢þ
>WENV183306714
OLTA01000540
[OLTA] human gut metagenome; faeces
703
785
+
Leu
TAA
[ENA]
¢þ
>WENV183306879
OLTD01000006
[OLTD] human gut metagenome; faeces
180722
180804
+
Leu
TAA
[ENA]
¢þ
>WENV183522487
ONZR01000089
[ONZR] human gut metagenome; human gut
44207
44289
+
Leu
TAA
[ENA]
¢þ
>WENV183751311
PPYE01008092
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
583
665
+
Leu
TAA
[ENA]
¢þ
>WENV183762887
PPYE01289027
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1058
1140
+
Leu
TAA
[ENA]
¢þ
>WENV183790284
PPYF01411170
[PPYF] human gut metagenome; stool from patient with Crohn's disease
112867
112949
+
Leu
TAA
[ENA]
¢þ
>C181033278
CP018757
Actinomycetota
Bifidobacterium bifidum PRI 1 [CP018757]
418939
418857
-
Leu
TAA
-
¡û
>W141523777
JGYO01000002
Actinomycetota
Bifidobacterium bifidum [JGYO]
961110
961193
+
Leu
TAA
[ENA]
¡û
>C191207994
LR134344
Actinomycetota
Bifidobacterium bifidum NCTC13001 [LR134344]
1774653
1774571
-
Leu
TAA
-
¡û
>W1910873763
NDXI01000001
Actinomycetota
Bifidobacterium bifidum 1 G1971 [NDXI]
420200
420282
+
Leu
TAA
[ENA]
¡û
>W1810541423
QDIH01000012
Actinomycetota
Bifidobacterium bifidum DS33_23 [QDIH]
11085
11003
-
Leu
TAA
[ENA]
¡û
>W1810541462
QDII01000001
Actinomycetota
Bifidobacterium bifidum DS31_23 [QDII]
83116
83034
-
Leu
TAA
[ENA]
¡û
>W1810541546
QDIJ01000007
Actinomycetota
Bifidobacterium bifidum DS30_23 [QDIJ]
43820
43902
+
Leu
TAA
[ENA]
¡û
>W1810541693
QDIM01000063
Actinomycetota
Bifidobacterium bifidum DS26_23 [QDIM]
11152
11070
-
Leu
TAA
[ENA]
¡û
>W1810542211
QDIX01000008
Actinomycetota
Bifidobacterium bifidum DS32_23 [QDIX]
67913
67995
+
Leu
TAA
[ENA]
¡û
>W1810542355
QDJA01000006
Actinomycetota
Bifidobacterium bifidum DS25_23 [QDJA]
68803
68721
-
Leu
TAA
[ENA]
¡û
>W1810836178
QSRS01000001
Actinomycetota
Bifidobacterium bifidum TF07-22 [QSRS]
79095
79013
-
Leu
TAA
[ENA]
¡û
>C151000220
AP012323
Actinomycetota
Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 [AP012323]
898843
898926
+
Leu
TAA
[Ensembl]
¡û
>C151068316
CP010412
Actinomycetota
Bifidobacterium bifidum BF3 [CP010412]
951854
951937
+
Leu
TAA
-
¡û
>C11102292
CP001840
Actinomycetota
Bifidobacterium bifidum PRL2010 [CP001840]
892162
892245
+
Leu
TAA
[Ensembl]
¡û
>W1511365029
JSDT01000002
Actinomycetota
Bifidobacterium bifidum 324B [JSDT]
949158
949241
+
Leu
TAA
[ENA]
¡û
>W1511365083
JSDU01000004
Actinomycetota
Bifidobacterium bifidum 85B [JSDU]
728720
728803
+
Leu
TAA
[ENA]
¡û
>W1511365132
JSDV01000004
Actinomycetota
Bifidobacterium bifidum A8 [JSDV]
812722
812805
+
Leu
TAA
[ENA]
¡û
>W1511365236
JSDX01000014
Actinomycetota
Bifidobacterium bifidum IPLA 20017 [JSDX]
206061
206144
+
Leu
TAA
[ENA]
¡û
>W1511365278
JSDY01000004
Actinomycetota
Bifidobacterium bifidum LMG 11582 [JSDY]
885331
885414
+
Leu
TAA
[ENA]
¡û
>W1511365332
JSDZ01000011
Actinomycetota
Bifidobacterium bifidum LMG 11583 [JSDZ]
437601
437684
+
Leu
TAA
[ENA]
¡û
>W1610045710
BBBT01000100
Actinomycetota
Bifidobacterium bifidum JCM 1254 [BBBT]
5818
5735
-
Leu
TAA
[ENA]
¡û
>W121077155
AKCA01000001
Actinomycetota
Bifidobacterium bifidum NCIMB 41171 [AKCA]
671938
672021
+
Leu
TAA
[ENA]
¡û
>W1610519759
JDUM01000001
Actinomycetota
Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 [JDUM]
47991
47908
-
Leu
TAA
[ENA]
¡û
>W1610889440
LRPO01000021
Actinomycetota
Bifidobacterium bifidum [LRPO]
19930
20013
+
Leu
TAA
[ENA]
¡û
>W1610921425
LSUL01000001
Actinomycetota
Bifidobacterium bifidum [LSUL]
76799
76716
-
Leu
TAA
[ENA]
¡û
>W1710042551
BBBT01000100
Actinomycetota
Bifidobacterium bifidum JCM 1254 [BBBT]
5818
5735
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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