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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218157 (36 seq.)
>W1710862150
LMED01000026
Gammaproteobacteria
Acinetobacter sp. Root1280 [LMED]
240925
241008
+
Tyr
GTA
[ENA]
¡û
>W1711333455
MBPR02000012
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [MBPR]
505
422
-
Tyr
GTA
[ENA]
¡û
>W1712084416
NHRM01000037
Gammaproteobacteria
Acinetobacter wuhouensis WCHA62 [NHRM]
535
452
-
Tyr
GTA
[ENA]
¡û
>W1712084546
NHRO01000012
Gammaproteobacteria
Acinetobacter sp. WCHAc010052 WCHA52 [NHRO]
542
459
-
Tyr
GTA
[ENA]
¡û
>W1712084746
NHRR01000015
Gammaproteobacteria
Acinetobacter chinensis WCHA5 [NHRR]
88930
89013
+
Tyr
GTA
[ENA]
¡û
>C171018843
CP012808
Gammaproteobacteria
Acinetobacter equi 114 [CP012808]
596473
596390
-
Tyr
GTA
-
¡û
>W131038039
AMFQ01000078
Gammaproteobacteria
Acinetobacter sp. WC-743 [AMFQ]
112413
112496
+
Tyr
GTA
[ENA]
¡û
>W131113610
APOS01000024
Gammaproteobacteria
Acinetobacter guillouiae CIP 63.46 [APOS]
88937
88854
-
Tyr
GTA
[ENA]
¡û
>W131114726
APPJ01000009
Gammaproteobacteria
Acinetobacter guillouiae NIPH 991 [APPJ]
244082
244165
+
Tyr
GTA
[ENA]
¡û
>W131114827
APPK01000060
Gammaproteobacteria
Acinetobacter bereziniae NIPH 3 [APPK]
18985
19068
+
Tyr
GTA
[ENA]
¡û
>W131115433
APPT01000018
Gammaproteobacteria
Acinetobacter baylyi DSM 14961 = CIP 107474 [APPT]
347949
347866
-
Tyr
GTA
[ENA]
¡û
>W131116350
APQG01000052
Gammaproteobacteria
Acinetobacter bereziniae CIP 70.12 [APQG]
225541
225624
+
Tyr
GTA
[ENA]
¡û
>W131193889
ASQG01000004
Gammaproteobacteria
Acinetobacter guillouiae MSP4-18 [ASQG]
157482
157565
+
Tyr
GTA
[ENA]
¡û
>W141238578
BBLJ01000025
Gammaproteobacteria
Acinetobacter bereziniae [BBLJ]
423
340
-
Tyr
GTA
[ENA]
¡û
>WENV170022195
BCQK01001504
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
3616
3533
-
Tyr
GTA
[ENA]
¢þ
>C181030807
CP018259
Gammaproteobacteria
Acinetobacter bereziniae XH901 [CP018259]
4208491
4208408
-
Tyr
GTA
-
¡û
>C191000111
AP014630
Gammaproteobacteria
Acinetobacter guillouiae NBRC 110550 [AP014630]
264729
264812
+
Tyr
GTA
-
¡û
>C191078923
CP031716
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [CP031716]
225974
226057
+
Tyr
GTA
-
¡û
>C191084803
CP032134
Gammaproteobacteria
Acinetobacter chinensis WCHAc010005 [CP032134]
298154
298237
+
Tyr
GTA
-
¡û
>C191084992
CP032143
Gammaproteobacteria
Acinetobacter sp. WCHAc010052 [CP032143]
3289003
3288920
-
Tyr
GTA
-
¡û
>C191101066
CP033133
Gammaproteobacteria
Acinetobacter wuhouensis WCHAW010062 [CP033133]
3713673
3713590
-
Tyr
GTA
-
¡û
>W141562614
JHZI01000002
Gammaproteobacteria
Acinetobacter baylyi DSM 14961 = CIP 107474 [JHZI]
78645
78728
+
Tyr
GTA
[ENA]
¡û
>W1910637807
LQXQ01000067
Gammaproteobacteria
Acinetobacter sp. CFCC 10889 [LQXQ]
425
342
-
Tyr
GTA
[ENA]
¡û
>W1910921964
NIFO01000013
Gammaproteobacteria
Acinetobacter piscicola LW15 [NIFO]
450
367
-
Tyr
GTA
[ENA]
¡û
>W1911568918
PCQO01000006
Gammaproteobacteria
Acinetobacter sp. MYb10 [PCQO]
499
416
-
Tyr
GTA
[ENA]
¡û
>W1911749110
QWFV01000081
Gammaproteobacteria
Acinetobacter bereziniae 374/14 [QWFV]
549
466
-
Tyr
GTA
[ENA]
¡û
>W1510016073
BBRY01000041
Gammaproteobacteria
Acinetobacter guillouiae KCTC 23200 [BBRY]
7930
8013
+
Tyr
GTA
[ENA]
¡û
>W1510069421
CDEL01000166
Gammaproteobacteria
Acinetobacter bereziniae CHI-40-1 [CDEL]
229891
229974
+
Tyr
GTA
[ENA]
¡û
>W1511452654
JVEK01000207
Gammaproteobacteria
Acinetobacter bereziniae 507_ABAU [JVEK]
1621
1538
-
Tyr
GTA
[ENA]
¡û
>W1511595622
LBNA01000050
Gammaproteobacteria
Acinetobacter sp. Ag2 [LBNA]
33228
33145
-
Tyr
GTA
[ENA]
¡û
>W11163746
AFIE01000025
Gammaproteobacteria
Acinetobacter sp. P8-3-8 [AFIE]
47899
47982
+
Tyr
GTA
[ENA]
¡û
>W1610060893
BCMA01000002
Gammaproteobacteria
Acinetobacter baylyi [BCMA]
78313
78396
+
Tyr
GTA
[ENA]
¡û
>W121047416
AIEI01000012
Gammaproteobacteria
Acinetobacter bereziniae LMG 1003 [AIEI]
921
838
-
Tyr
GTA
[ENA]
¡û
>W1610724496
LMED01000026
Gammaproteobacteria
Acinetobacter sp. Root1280 [LMED]
240925
241008
+
Tyr
GTA
[ENA]
¡û
>W1611065615
MBPR01000229
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [MBPR]
505
422
-
Tyr
GTA
[ENA]
¡û
>W1710058189
BCMA01000002
Gammaproteobacteria
Acinetobacter baylyi [BCMA]
78313
78396
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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