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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218187 (120 seq.)
>W1710889736
LNBC01000009
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
101120
101037
-
Tyr
GTA
[ENA]
¡û
>C172000180
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
692026
691943
-
Tyr
GTA
-
¡û
>C172000184
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
178992
178909
-
Tyr
GTA
-
¡û
>W131158896
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
2216446
2216529
+
Tyr
GTA
[ENA]
¡û
>C027987
CP000490
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
964835
964918
+
Tyr
GTA
[Ensembl]
¡û
>WENV180041178
LLBZ010059016
[LLBZ] soil metagenome; soil from tomato rhizosphere
9542
9459
-
Tyr
GTA
[ENA]
¢þ
>WENV180103341
OAPA01017916
[OAPA] marine metagenome; ENVO:00002010
248
165
-
Tyr
GTA
[ENA]
¢þ
>WENV180359804
OBNS01034719
[OBNS] marine metagenome; Seawater
393
310
-
Tyr
GTA
[ENA]
¢þ
>WENV180361032
OBNU01092134
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
346
263
-
Tyr
GTA
[ENA]
¢þ
>WENV180370681
OBOH01173941
[OBOH] marine metagenome; ENVO:00002010
8
91
+
Tyr
GTA
[ENA]
¢þ
>WENV180376742
OBOM01068307
[OBOM] marine metagenome; Seawater
208
291
+
Tyr
GTA
[ENA]
¢þ
>WENV180381887
OBOS01038515
[OBOS] marine metagenome; ENVO 00002150
354
437
+
Tyr
GTA
[ENA]
¢þ
>WENV180384144
OBOW01018967
[OBOW] marine metagenome; seawater
54
137
+
Tyr
GTA
[ENA]
¢þ
>WENV181120472
OEFK01002184
[OEFK] marine metagenome; ENVO:00002010 seawater
1206
1123
-
Tyr
GTA
[ENA]
¢þ
>WENV181233704
OFET01000053
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
64000
63917
-
Tyr
GTA
[ENA]
¢þ
>WENV181233968
OFET01000470
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
5230
5147
-
Tyr
GTA
[ENA]
¢þ
>WENV181233994
OFET01000660
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
7728
7811
+
Tyr
GTA
[ENA]
¢þ
>WENV181234318
OFEU01000035
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
51122
51205
+
Tyr
GTA
[ENA]
¢þ
>WENV181234594
OFEU01000512
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
6811
6728
-
Tyr
GTA
[ENA]
¢þ
>WENV181411958
OGCI01064459
[OGCI] hot springs metagenome; Hot spring water
235
318
+
Tyr
GTA
[ENA]
¢þ
>WENV170266262
CERE01055073
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2663
2746
+
Tyr
GTA
[ENA]
¢þ
>WENV170564862
CZPY01000009
[CZPY] metagenome; PAHs-polluted Soil
101120
101037
-
Tyr
GTA
[ENA]
¢þ
>WENV170725942
LSQX01361746
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2508
2591
+
Tyr
GTA
[ENA]
¢þ
>W09200014
AAIT01000010
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
22490
22407
-
Tyr
GTA
[ENA]
¡û
>C181099809
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
197394
197311
-
Tyr
GTA
-
¡û
>C181119672
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
2010168
2010251
+
Tyr
GTA
-
¡û
>C181190854
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
685451
685368
-
Tyr
GTA
-
¡û
>C181203418
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
1917633
1917550
-
Tyr
GTA
-
¡û
>C191073597
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
2200642
2200559
-
Tyr
GTA
-
¡û
>C191134409
CP035091
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
964556
964639
+
Tyr
GTA
-
¡û
>C191144265
CP035510
Alphaproteobacteria
Haematobacter massiliensis OT1 [CP035510]
1597722
1597639
-
Tyr
GTA
-
¡û
>W142000102
AOLV01000010
Alphaproteobacteria
Rubellimicrobium thermophilum DSM 16684 [AOLV]
411635
411718
+
Tyr
GTA
[ENA]
¡û
>W142000572
AYXI01000210
Alphaproteobacteria
Defluviimonas sp. 20V17 [AYXI]
74278
74361
+
Tyr
GTA
[ENA]
¡û
>W142000591
AZVA01000004
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
93810
93727
-
Tyr
GTA
[ENA]
¡û
>W142000722
JAEM01000033
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
4535
4452
-
Tyr
GTA
[ENA]
¡û
>W142000723
JAEN01000007
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
3158
3075
-
Tyr
GTA
[ENA]
¡û
>W142000731
JAGK01000030
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
39142
39225
+
Tyr
GTA
[ENA]
¡û
>W142000756
JFGS01000001
Alphaproteobacteria
Haematobacter missouriensis [JFGS]
155123
155206
+
Tyr
GTA
[ENA]
¡û
>W142000800
JGYG01000001
Alphaproteobacteria
Haematobacter massiliensis [JGYG]
488281
488198
-
Tyr
GTA
[ENA]
¡û
>W142000982
JHWH01000021
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
86061
86144
+
Tyr
GTA
[ENA]
¡û
>C142000010
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
2209176
2209093
-
Tyr
GTA
[Ensembl]
¡û
>W1910547064
FZNM01000003
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
458975
458892
-
Tyr
GTA
[ENA]
¡û
>W1910549005
FZOY01000003
Alphaproteobacteria
Tropicimonas sediminicola DSM 29339 [FZOY]
4195
4112
-
Tyr
GTA
[ENA]
¡û
>W1910549852
FZQB01000001
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [FZQB]
444064
443981
-
Tyr
GTA
[ENA]
¡û
>W1911245307
NSJZ01000001
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
447608
447691
+
Tyr
GTA
[ENA]
¡û
>W1911397903
NWMQ01000003
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
160368
160285
-
Tyr
GTA
[ENA]
¡û
>W1911495038
OBMN01000007
Alphaproteobacteria
Phaeovulum vinaykumarii JA123 [OBMN]
168782
168865
+
Tyr
GTA
[ENA]
¡û
>W1911538654
OMOQ01000001
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
2308274
2308357
+
Tyr
GTA
[ENA]
¡û
>W1911698516
QNRC01000033
Alphaproteobacteria
Paracoccus siganidrum M26 [QNRC]
26795
26878
+
Tyr
GTA
[ENA]
¡û
>W1911705513
QOKZ01000004
Alphaproteobacteria
Paracoccus alkanivorans 4·î2Æü [QOKZ]
149022
149105
+
Tyr
GTA
[ENA]
¡û
>W1911810980
QZCG01000015
Alphaproteobacteria
Paracoccus onubensis 1011MAR3C25 [QZCG]
19924
20007
+
Tyr
GTA
[ENA]
¡û
>W1911813246
QZEW01000032
Alphaproteobacteria
Paracoccus siganidrum DSM 26381 [QZEW]
26795
26878
+
Tyr
GTA
[ENA]
¡û
>W1810120357
PHSN01000024
Alphaproteobacteria
Acidimangrovimonas sediminis MS2-2 [PHSN]
73254
73337
+
Tyr
GTA
[ENA]
¡û
>W1810235961
PPGA01000001
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
84152
84235
+
Tyr
GTA
[ENA]
¡û
>W1810268910
PRDS01000011
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
36484
36401
-
Tyr
GTA
[ENA]
¡û
>W1810351382
PVEP01000005
Alphaproteobacteria
Defluviimonas denitrificans DSM 18921 [PVEP]
217712
217795
+
Tyr
GTA
[ENA]
¡û
>W1810356713
PVND01000001
Alphaproteobacteria
Meinhardsimonia xiamenensis DSM 24422 [PVND]
134388
134471
+
Tyr
GTA
[ENA]
¡û
>W1810364323
PVTD01000002
Alphaproteobacteria
Aliiruegeria haliotis DSM 29328 [PVTD]
125838
125921
+
Tyr
GTA
[ENA]
¡û
>W1810385265
PXNQ01000006
Alphaproteobacteria
Paracoccus methylarcula VKM B-2159 [PXNQ]
229343
229260
-
Tyr
GTA
[ENA]
¡û
>W1810444986
PZKF01000008
Alphaproteobacteria
Phaeovulum veldkampii DSM 11550 [PZKF]
8012
7929
-
Tyr
GTA
[ENA]
¡û
>W1810464036
QAAA01000010
Alphaproteobacteria
Rhodovulum imhoffii DSM 18064 [QAAA]
9971
10054
+
Tyr
GTA
[ENA]
¡û
>W1810585321
QFCQ01000065
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
10359
10442
+
Tyr
GTA
[ENA]
¡û
>W1810596888
QGGW01000004
Alphaproteobacteria
Roseicyclus mahoneyensis DSM 16097 [QGGW]
187886
187969
+
Tyr
GTA
[ENA]
¡û
>W1810603243
QGKU01000048
Alphaproteobacteria
Meridianimarinicoccus roseus TG-679 [QGKU]
182724
182807
+
Tyr
GTA
[ENA]
¡û
>W1810697121
QLUV01000006
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
14171
14254
+
Tyr
GTA
[ENA]
¡û
>W1810750754
QOZU01000105
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
10250
10333
+
Tyr
GTA
[ENA]
¡û
>W1810762346
QPML01000207
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
10349
10432
+
Tyr
GTA
[ENA]
¡û
>W1810862264
QTUJ01000003
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
390327
390410
+
Tyr
GTA
[ENA]
¡û
>W1810884855
QUMX01000010
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
109902
109985
+
Tyr
GTA
[ENA]
¡û
>C152000016
CP004372
Alphaproteobacteria
Roseibacterium elongatum DSM 19469 DFL-43 [CP004372]
2215249
2215166
-
Tyr
GTA
[Ensembl]
¡û
>W1511348576
JRKN01000048
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
567
484
-
Tyr
GTA
[ENA]
¡û
>W1511348614
JRKO01000031
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
17459
17376
-
Tyr
GTA
[ENA]
¡û
>W1511348719
JRKQ01000253
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
407
490
+
Tyr
GTA
[ENA]
¡û
>C11200021
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
2315389
2315472
+
Tyr
GTA
[Ensembl]
¡û
>W11200057
AEPN01000014
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
86658
86741
+
Tyr
GTA
[ENA]
¡û
>W122000103
AJFB01000968
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
520
437
-
Tyr
GTA
[ENA]
¡û
>W1610750114
LNBC01000009
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
101120
101037
-
Tyr
GTA
[ENA]
¡û
>W1620000126
BBFH01000556
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
276
359
+
Tyr
GTA
[ENA]
¡û
>W1620001198
LJSF01000006
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
145770
145853
+
Tyr
GTA
[ENA]
¡û
>W1620001199
LJSV01000029
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
20084
20167
+
Tyr
GTA
[ENA]
¡û
>W1620001200
LJSY01000006
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
62924
62841
-
Tyr
GTA
[ENA]
¡û
>W1620001254
LLWQ01000086
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
54438
54521
+
Tyr
GTA
[ENA]
¡û
>W1620001311
LNCI01000009
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
49842
49925
+
Tyr
GTA
[ENA]
¡û
>W1620001342
LOAS01000009
Alphaproteobacteria
Aliiruegeria sabulilitoris [LOAS]
500
417
-
Tyr
GTA
[ENA]
¡û
>W1720000039
AQQQ01000006
Alphaproteobacteria
Roseovarius sp. 22II1-1F6A [AQQQ]
213192
213109
-
Tyr
GTA
[ENA]
¡û
>W1720000091
BBFH01000556
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
276
359
+
Tyr
GTA
[ENA]
¡û
>W1720000941
FNAH01000006
Alphaproteobacteria
Paracoccus isoporae [FNAH]
179686
179769
+
Tyr
GTA
[ENA]
¡û
>W1720000965
FNEA01000026
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
13902
13819
-
Tyr
GTA
[ENA]
¡û
>W1720000969
FNEK01000027
Alphaproteobacteria
Aliiruegeria lutimaris [FNEK]
13458
13375
-
Tyr
GTA
[ENA]
¡û
>W1720000976
FNFV01000005
Alphaproteobacteria
Meinhardsimonia xiamenensis xiamenense [FNFV]
183691
183608
-
Tyr
GTA
[ENA]
¡û
>W1720000977
FNGE01000025
Alphaproteobacteria
Paracoccus chinensis [FNGE]
6398
6315
-
Tyr
GTA
[ENA]
¡û
>W1720001000
FNNA01000001
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
193769
193686
-
Tyr
GTA
[ENA]
¡û
>W1720001002
FNOB01000009
Alphaproteobacteria
Allgaiera indica [FNOB]
193393
193476
+
Tyr
GTA
[ENA]
¡û
>W1720001055
FODE01000006
Alphaproteobacteria
Paracoccus alcaliphilus [FODE]
137956
138039
+
Tyr
GTA
[ENA]
¡û
>W1720001104
FOPU01000017
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
69798
69881
+
Tyr
GTA
[ENA]
¡û
>W1720001128
FOWA01000032
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
39142
39225
+
Tyr
GTA
[ENA]
¡û
>W1720001140
FOYK01000026
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
13884
13801
-
Tyr
GTA
[ENA]
¡û
>W1720001200
FTMK01000019
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
2645
2562
-
Tyr
GTA
[ENA]
¡û
>W1720001208
FTOM01000007
Alphaproteobacteria
Phaeovulum vinaykumarii [FTOM]
168782
168865
+
Tyr
GTA
[ENA]
¡û
>W1720001209
FTOT01000002
Alphaproteobacteria
Gemmobacter megaterium [FTOT]
319644
319727
+
Tyr
GTA
[ENA]
¡û
>W1720001234
FXAQ01000008
Alphaproteobacteria
Paracoccus sp. J56 [FXAQ]
112089
112172
+
Tyr
GTA
[ENA]
¡û
>W1720001622
LJSF01000006
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
145770
145853
+
Tyr
GTA
[ENA]
¡û
>W1720001623
LJSV01000029
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
20084
20167
+
Tyr
GTA
[ENA]
¡û
>W1720001624
LJSY01000006
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
62924
62841
-
Tyr
GTA
[ENA]
¡û
>W1720001674
LLWQ01000086
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
54438
54521
+
Tyr
GTA
[ENA]
¡û
>W1720001730
LNCI01000009
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
49842
49925
+
Tyr
GTA
[ENA]
¡û
>W1720001760
LOAS01000009
Alphaproteobacteria
Aliiruegeria sabulilitoris [LOAS]
500
417
-
Tyr
GTA
[ENA]
¡û
>W1720003162
MSPP01000003
Alphaproteobacteria
Marivivens niveibacter MCCC 1A06712 [MSPP]
549374
549291
-
Tyr
GTA
[ENA]
¡û
>W1720003996
NIPU01000014
Alphaproteobacteria
Haematobacter massiliensis [NIPU]
306452
306369
-
Tyr
GTA
[ENA]
¡û
>W1720003998
NIPV01000011
Alphaproteobacteria
Haematobacter missouriensis [NIPV]
28624
28707
+
Tyr
GTA
[ENA]
¡û
>W1720004000
NIPW01000028
Alphaproteobacteria
Haematobacter genomosp. 1 [NIPW]
47613
47530
-
Tyr
GTA
[ENA]
¡û
>W1720004001
NIPX01000002
Alphaproteobacteria
Haematobacter missouriensis [NIPX]
155207
155290
+
Tyr
GTA
[ENA]
¡û
>W1720004002
NIPY01000021
Alphaproteobacteria
Haematobacter massiliensis [NIPY]
65223
65140
-
Tyr
GTA
[ENA]
¡û
>W1720004004
NIPZ01000028
Alphaproteobacteria
Paracoccus yeei [NIPZ]
78246
78329
+
Tyr
GTA
[ENA]
¡û
>W1710540937
FNXG01000002
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
81204
81287
+
Tyr
GTA
[ENA]
¡û
>W1710555570
FOJO01000045
Alphaproteobacteria
Paracoccus halophilus [FOJO]
15627
15710
+
Tyr
GTA
[ENA]
¡û
>W1710557716
FOLG01000002
Alphaproteobacteria
Tropicimonas isoalkanivorans [FOLG]
431592
431675
+
Tyr
GTA
[ENA]
¡û
>W1710581762
FPKI01000009
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
112170
112253
+
Tyr
GTA
[ENA]
¡û
>W1710592361
FRCK01000001
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
205589
205506
-
Tyr
GTA
[ENA]
¡û
>W132000275
AUCM01000004
Alphaproteobacteria
Gemmobacter nectariphilus DSM 15620 [AUCM]
2414
2331
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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