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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218314 (41 seq.)
>W1711093778
LTFH01000065
Actinomycetota
Corynebacterium sp. HMSC062E11 HMSC062E11 [LTFH]
21061
21135
+
Arg
TCT
[ENA]
¡û
>W1711094336
LTFV01000049
Actinomycetota
Corynebacterium sp. HMSC078A10 [LTFV]
22821
22895
+
Arg
TCT
[ENA]
¡û
>W1711094386
LTFW01000059
Actinomycetota
Corynebacterium sp. HMSC074A09 HMSC074A09 [LTFW]
4638
4564
-
Arg
TCT
[ENA]
¡û
>W1711094438
LTFX01000075
Actinomycetota
Corynebacterium sp. HMSC076G08 HMSC076G08 [LTFX]
7200
7274
+
Arg
TCT
[ENA]
¡û
>W1711094980
LTGK01000083
Actinomycetota
Corynebacterium sp. HMSC068H04 HMSC068H04 [LTGK]
20990
21064
+
Arg
TCT
[ENA]
¡û
>W1711095311
LTGR01000055
Actinomycetota
Corynebacterium sp. HMSC062A03 [LTGR]
4640
4566
-
Arg
TCT
[ENA]
¡û
>W1711095997
LTHJ01000039
Actinomycetota
Corynebacterium sp. HMSC065D07 [LTHJ]
81417
81343
-
Arg
TCT
[ENA]
¡û
>W1711098669
LTJU01000036
Actinomycetota
Corynebacterium sp. HMSC055A01 [LTJU]
22048
22122
+
Arg
TCT
[ENA]
¡û
>W1711099016
LTKC01000089
Actinomycetota
Corynebacterium sp. HMSC072A04 [LTKC]
21925
21999
+
Arg
TCT
[ENA]
¡û
>W1711099704
LTKS01000010
Actinomycetota
Corynebacterium sp. HMSC070E08 [LTKS]
21989
22063
+
Arg
TCT
[ENA]
¡û
>W1711099794
LTKT01000065
Actinomycetota
Corynebacterium sp. HMSC074E01 [LTKT]
74779
74705
-
Arg
TCT
[ENA]
¡û
>W1711106062
LTRL01000021
Actinomycetota
Corynebacterium sp. HMSC036D02 [LTRL]
23391
23465
+
Arg
TCT
[ENA]
¡û
>W1711106248
LTRQ01000104
Actinomycetota
Corynebacterium sp. HMSC035E02 [LTRQ]
22417
22491
+
Arg
TCT
[ENA]
¡û
>W1711108149
LTTL01000036
Actinomycetota
Corynebacterium sp. HMSC034H07 HMSC034H07 [LTTL]
4672
4598
-
Arg
TCT
[ENA]
¡û
>W1711108597
LTTW01000058
Actinomycetota
Corynebacterium sp. HMSC066C02 [LTTW]
20463
20537
+
Arg
TCT
[ENA]
¡û
>W1711108716
LTTZ01000080
Actinomycetota
Corynebacterium sp. HMSC068G04 [LTTZ]
35568
35494
-
Arg
TCT
[ENA]
¡û
>W1711109290
LTUN01000039
Actinomycetota
Corynebacterium sp. HMSC074C01 [LTUN]
67481
67407
-
Arg
TCT
[ENA]
¡û
>W1711109790
LTUY01000048
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
16472
16546
+
Arg
TCT
[ENA]
¡û
>W1711110642
LTVS01000055
Actinomycetota
Corynebacterium sp. HMSC072D12 [LTVS]
60439
60365
-
Arg
TCT
[ENA]
¡û
>W1711110951
LTWA01000013
Actinomycetota
Corynebacterium sp. HMSC074H12 [LTWA]
93952
93878
-
Arg
TCT
[ENA]
¡û
>W1711186661
LWOK01000004
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
102616
102542
-
Arg
TCT
[ENA]
¡û
>WENV181326274
OFLL01000041
[OFLL] metagenome; faeces
22375
22449
+
Arg
TCT
[ENA]
¢þ
>WENV182629022
OJKR01001310
[OJKR] metagenome; surface
2833
2759
-
Arg
TCT
[ENA]
¢þ
>WENV182636407
OJKZ01006293
[OJKZ] metagenome; surface
1472
1398
-
Arg
TCT
[ENA]
¢þ
>WENV182640319
OJLB01002692
[OJLB] metagenome; surface
2471
2545
+
Arg
TCT
[ENA]
¢þ
>WENV182641898
OJLK01010472
[OJLK] metagenome; surface
376
450
+
Arg
TCT
[ENA]
¢þ
>WENV182646303
OJMA01001335
[OJMA] metagenome; surface
536
611
+
Arg
TCT
[ENA]
¢þ
>WENV182671591
OJNM01000386
[OJNM] metagenome; surface
15168
15242
+
Arg
TCT
[ENA]
¢þ
>C181144754
CP027001
Actinomycetota
Corynebacterium camporealensis CIP 105508 [CP027001]
1908743
1908818
+
Arg
TCT
-
¡û
>C191209539
LR134377
Actinomycetota
Corynebacterium kutscheri NCTC949 [LR134377]
1317749
1317675
-
Arg
TCT
-
¡û
>C191209747
LR134381
Actinomycetota
Corynebacterium kutscheri NCTC11138 [LR134381]
109897
109823
-
Arg
TCT
-
¡û
>C191210897
LR134407
Actinomycetota
Corynebacterium kutscheri NCTC3655 [LR134407]
2368089
2368015
-
Arg
TCT
-
¡û
>W09127869
ACLH01000096
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 [ACLH]
20677
20751
+
Arg
TCT
[ENA]
¡û
>C09102742
CP001601
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 DSM 44827; ATCC 700975 [CP001601]
2236705
2236779
+
Arg
TCT
[Ensembl]
¡û
>W1911596647
PNHI01000006
Actinomycetota
Corynebacterium aurimucosum UMB1300 [PNHI]
90260
90186
-
Arg
TCT
[ENA]
¡û
>W1810187549
PKHR01000001
Actinomycetota
Corynebacterium aurimucosum UMB0043 [PKHR]
72107
72033
-
Arg
TCT
[ENA]
¡û
>C151079709
CP011311
Actinomycetota
Corynebacterium camporealensis DSM 44610 [CP011311]
1909720
1909796
+
Arg
TCT
[Ensembl]
¡û
>C151079783
CP011312
Actinomycetota
Corynebacterium kutscheri DSM 20755 [CP011312]
699809
699735
-
Arg
TCT
[Ensembl]
¡û
>W1511356292
JRUB01000003
Actinomycetota
Corynebacterium camporealensis CIP 105508 [JRUB]
367952
367876
-
Arg
TCT
[ENA]
¡û
>W1511438556
JUMN01000070
Actinomycetota
Corynebacterium aurimucosum 945_CAUR [JUMN]
67319
67245
-
Arg
TCT
[ENA]
¡û
>W1511585503
LAYQ01000004
Actinomycetota
Corynebacterium minutissimum 1941 [LAYQ]
30674
30748
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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