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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218394 (102 seq.)
>W1710857599
LMAJ01000039
Bacteroidota
Flavobacteriaceae bacterium CRH [LMAJ]
25587
25668
+
Tyr
GTA
[ENA]
¡û
>W1710868428
LMJB01000007
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
440973
441056
+
Tyr
GTA
[ENA]
¡û
>W1710868435
LMJB01000008
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
349864
349947
+
Tyr
GTA
[ENA]
¡û
>W1710872511
LMMA01000035
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
53500
53419
-
Tyr
GTA
[ENA]
¡û
>W1711138913
LVEN01000012
Bacteroidota
Flavobacterium piscis [LVEN]
387746
387663
-
Tyr
GTA
[ENA]
¡û
>W1711413511
MGWH01000002
Bacteroidota
Flavobacteria bacterium GWA2_35_26 [MGWH]
19186
19269
+
Tyr
GTA
[ENA]
¡û
>W1711712550
MTCA01000275
Bacteroidota
Flavobacterium sp. FPG59 [MTCA]
120
203
+
Tyr
GTA
[ENA]
¡û
>W1711743995
MUFW01000002
Bacteroidota
Flavobacterium sp. LM4 [MUFW]
14014
14095
+
Tyr
GTA
[ENA]
¡û
>W1711744083
MUFX01000005
Bacteroidota
Flavobacterium sp. LM5 [MUFX]
245866
245949
+
Tyr
GTA
[ENA]
¡û
>W1711748558
MULJ01000004
Bacteroidota
Flavobacterium sp. KBS0721 [MULJ]
680022
679939
-
Tyr
GTA
[ENA]
¡û
>C171053209
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
4379871
4379954
+
Tyr
GTA
-
¡û
>C171053210
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
3557855
3557774
-
Tyr
GTA
-
¡û
>C171053231
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
792753
792670
-
Tyr
GTA
-
¡û
>C171067643
CP017774
Bacteroidota
Flavobacterium commune PK15 [CP017774]
3450952
3450869
-
Tyr
GTA
-
¡û
>W131214053
ATTM01000006
Bacteroidota
Flavobacterium antarcticum DSM 19726 [ATTM]
8266
8183
-
Tyr
GTA
[ENA]
¡û
>W131225386
AUDN01000015
Bacteroidota
Flavobacterium tegetincola DSM 22377 [AUDN]
96326
96409
+
Tyr
GTA
[ENA]
¡û
>W131229097
AUGN01000001
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
99827
99744
-
Tyr
GTA
[ENA]
¡û
>W131229115
AUGN01000008
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
109489
109572
+
Tyr
GTA
[ENA]
¡û
>W131229157
AUGO01000007
Bacteroidota
Flavobacterium soli DSM 19725 [AUGO]
85713
85630
-
Tyr
GTA
[ENA]
¡û
>C009419
CP000685
Bacteroidota
Flavobacterium johnsoniae UW101 UW101; ATCC 17061 [CP000685]
5248419
5248499
+
Tyr
GTA
[Ensembl]
¡û
>WENV180285544
OBID01515255
[OBID] metagenome; sludge
69
150
+
Tyr
GTA
[ENA]
¢þ
>WENV180391128
OBPM01015991
[OBPM] marine metagenome; ENVO:00002010
136
217
+
Tyr
GTA
[ENA]
¢þ
>WENV180593880
OCOY01001876
[OCOY] marine metagenome; ENVO:00002010
3
84
+
Tyr
GTA
[ENA]
¢þ
>WENV181378690
OFRB01054505
[OFRB] wastewater metagenome; Exp Tend CN 0WW
460
379
-
Tyr
GTA
[ENA]
¢þ
>WENV181380134
OFRD01033447
[OFRD] wastewater metagenome; Exp Tend CN 100WW
855
774
-
Tyr
GTA
[ENA]
¢þ
>WENV181384750
OFRI01008379
[OFRI] wastewater metagenome; Exp Tend VB 90WW
1541
1460
-
Tyr
GTA
[ENA]
¢þ
>WENV181837114
OGVK01002834
[OGVK] freshwater metagenome; freshwater
944
1025
+
Tyr
GTA
[ENA]
¢þ
>W141291512
JASY01000010
Bacteroidota
Flavobacterium chungangense LMG 26729 [JASY]
13172
13253
+
Tyr
GTA
[ENA]
¡û
>W141291927
JATV01000005
Bacteroidota
Flavobacterium succinicans LMG 10402 [JATV]
155867
155950
+
Tyr
GTA
[ENA]
¡û
>WENV183726775
PJTO01000156
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
33431
33512
+
Tyr
GTA
[ENA]
¢þ
>WENV183734834
PJUA01000041
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
121241
121322
+
Tyr
GTA
[ENA]
¢þ
>WENV183735918
PJUB01011470
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
456
375
-
Tyr
GTA
[ENA]
¢þ
>WENV183736118
PJUC01000035
[PJUC] soil metagenome; Soil enriched on filter paper
121241
121322
+
Tyr
GTA
[ENA]
¢þ
>WENV170559633
CXWL01134340
[CXWL] groundwater metagenome; biofilm material
1313
1396
+
Tyr
GTA
[ENA]
¢þ
>W09105471
AAPM01000006
Bacteroidota
Flavobacterium johnsoniae UW101 [AAPM]
327827
327746
-
Tyr
GTA
[ENA]
¡û
>C181047486
CP020919
Bacteroidota
Flavobacterium kingsejongi WV39 [CP020919]
3979439
3979520
+
Tyr
GTA
-
¡û
>C181176628
CP029255
Bacteroidota
Flavobacterium crocinum HYN0056 [CP029255]
5025920
5026001
+
Tyr
GTA
-
¡û
>C191025448
CP023642
Bacteroidota
Flavobacterium anhuiense M168 [CP023642]
1060491
1060572
+
Tyr
GTA
-
¡û
>W141726704
JNCA01000032
Bacteroidota
Flavobacterium seoulense EM1321 [JNCA]
61486
61403
-
Tyr
GTA
[ENA]
¡û
>W141726705
JNCA01000032
Bacteroidota
Flavobacterium seoulense EM1321 [JNCA]
61207
61124
-
Tyr
GTA
[ENA]
¡û
>W141809434
JPRM01000057
Bacteroidota
Flavobacterium hydatis [JPRM]
21449
21368
-
Tyr
GTA
[ENA]
¡û
>W1910183285
BJNP01000001
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
49656
49575
-
Tyr
GTA
[ENA]
¡û
>W1910547012
FZNL01000006
Bacteroidota
Flavobacterium sp. ov086 ov086 OV086 [FZNL]
259240
259321
+
Tyr
GTA
[ENA]
¡û
>W1910577910
JUIV01000003
Bacteroidota
Flavobacterium anhuiense RCM74 [JUIV]
63597
63516
-
Tyr
GTA
[ENA]
¡û
>W1910577920
JUIV01000010
Bacteroidota
Flavobacterium anhuiense RCM74 [JUIV]
91194
91275
+
Tyr
GTA
[ENA]
¡û
>W1910728184
MGWJ01000035
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
5674
5593
-
Tyr
GTA
[ENA]
¡û
>W1910728189
MGWJ01000070
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
10674
10593
-
Tyr
GTA
[ENA]
¡û
>W1910805349
MTQF01000006
Bacteroidota
[Flexibacter] sp. ATCC 35103 [MTQF]
498819
498900
+
Tyr
GTA
[ENA]
¡û
>W1910808792
MUGQ01000004
Bacteroidota
Flavobacterium aquatile ATCC 11947 [MUGQ]
19863
19944
+
Tyr
GTA
[ENA]
¡û
>W1910808810
MUGQ01000012
Bacteroidota
Flavobacterium aquatile ATCC 11947 [MUGQ]
24952
24871
-
Tyr
GTA
[ENA]
¡û
>W1910808858
MUGR01000036
Bacteroidota
Flavobacterium aquidurense DSM 18293 [MUGR]
178
97
-
Tyr
GTA
[ENA]
¡û
>W1910808932
MUGT01000035
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
23478
23397
-
Tyr
GTA
[ENA]
¡û
>W1910808939
MUGT01000047
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
75520
75601
+
Tyr
GTA
[ENA]
¡û
>W1910809159
MUGX01000029
Bacteroidota
Flavobacterium hibernum ATCC 51468 [MUGX]
184134
184053
-
Tyr
GTA
[ENA]
¡û
>W1910809219
MUGY01000031
Bacteroidota
Flavobacterium hydatis ATCC 29551 [MUGY]
27712
27631
-
Tyr
GTA
[ENA]
¡û
>W1910809263
MUGZ01000011
Bacteroidota
Flavobacterium johnsoniae UW101 ATCC 17061 [MUGZ]
29803
29884
+
Tyr
GTA
[ENA]
¡û
>W1910809385
MUHC01000006
Bacteroidota
Flavobacterium piscis CCUG 60099 [MUHC]
17771
17852
+
Tyr
GTA
[ENA]
¡û
>W1911564278
PCMW01000032
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
57105
57186
+
Tyr
GTA
[ENA]
¡û
>W1911564282
PCMW01000040
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
49489
49408
-
Tyr
GTA
[ENA]
¡û
>W1911747535
QWDM01000001
Bacteroidota
Flavobacterium cupreum CCM 8825 [QWDM]
492673
492756
+
Tyr
GTA
[ENA]
¡û
>W1810071524
PEEU01000001
Bacteroidota
Flavobacterium sp. 9 [PEEU]
598805
598886
+
Tyr
GTA
[ENA]
¡û
>W1810071525
PEEU01000001
Bacteroidota
Flavobacterium sp. 9 [PEEU]
599171
599252
+
Tyr
GTA
[ENA]
¡û
>W1810365448
PVUB01000007
Bacteroidota
Flavobacterium granuli DSM 17797 [PVUB]
42368
42451
+
Tyr
GTA
[ENA]
¡û
>W1810657119
QJGZ01000040
Bacteroidota
Flavobacterium sharifuzzamanii A7.6 [QJGZ]
81134
81053
-
Tyr
GTA
[ENA]
¡û
>W1810672683
QJTO01000023
Bacteroidota
Flavobacterium sp. GV069 [QJTO]
76899
76980
+
Tyr
GTA
[ENA]
¡û
>W1810676076
QKLS01000023
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
76899
76980
+
Tyr
GTA
[ENA]
¡û
>W1810861164
QTTR01000003
Bacteroidota
Flavobacterium sp. GV028 [QTTR]
246113
246032
-
Tyr
GTA
[ENA]
¡û
>W1511311968
JPRK01000002
Bacteroidota
Flavobacterium hibernum DSM 12611 [JPRK]
312357
312276
-
Tyr
GTA
[ENA]
¡û
>W1511346586
JRHH01000001
Bacteroidota
Flavobacterium aquatile LMG 4008 [JRHH]
393109
393192
+
Tyr
GTA
[ENA]
¡û
>W1511346604
JRHH01000003
Bacteroidota
Flavobacterium aquatile LMG 4008 [JRHH]
836323
836242
-
Tyr
GTA
[ENA]
¡û
>W1511526827
JYGZ01000002
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
223773
223856
+
Tyr
GTA
[ENA]
¡û
>W1511526863
JYGZ01000007
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
196055
195972
-
Tyr
GTA
[ENA]
¡û
>C121017001
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
912698
912781
+
Tyr
GTA
[Ensembl]
¡û
>C121017025
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
1990636
1990553
-
Tyr
GTA
[Ensembl]
¡û
>WENV058615
AACY023335675
Marine microbial communities from Global Ocean Sampling (GOS)
737
820
+
Tyr
GTA
[ENA]
>W121103507
AKZQ01000019
Bacteroidota
Flavobacterium sp. F52 [AKZQ]
304717
304634
-
Tyr
GTA
[ENA]
¡û
>W121103530
AKZQ01000030
Bacteroidota
Flavobacterium sp. F52 [AKZQ]
64071
63988
-
Tyr
GTA
[ENA]
¡û
>W121103541
AKZQ01000035
Bacteroidota
Flavobacterium sp. F52 [AKZQ]
76819
76902
+
Tyr
GTA
[ENA]
¡û
>W1610521447
JMTM01000017
Bacteroidota
Flavobacterium succinicans [JMTM]
618919
618836
-
Tyr
GTA
[ENA]
¡û
>W1610521477
JMTM01000074
Bacteroidota
Flavobacterium succinicans [JMTM]
45994
46077
+
Tyr
GTA
[ENA]
¡û
>W1610534846
JRLF01000001
Bacteroidota
Flavobacterium aquidurense [JRLF]
130876
130959
+
Tyr
GTA
[ENA]
¡û
>W1610719980
LMAJ01000039
Bacteroidota
Flavobacteriaceae bacterium CRH [LMAJ]
25587
25668
+
Tyr
GTA
[ENA]
¡û
>W1610730774
LMJB01000007
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
440973
441056
+
Tyr
GTA
[ENA]
¡û
>W1610730781
LMJB01000008
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
349864
349947
+
Tyr
GTA
[ENA]
¡û
>W1610734857
LMMA01000035
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
53500
53419
-
Tyr
GTA
[ENA]
¡û
>W1610949921
LVEN01000012
Bacteroidota
Flavobacterium piscis [LVEN]
387746
387663
-
Tyr
GTA
[ENA]
¡û
>W1710507235
FMVC01000003
Bacteroidota
Flavobacterium anhuiense [FMVC]
102727
102810
+
Tyr
GTA
[ENA]
¡û
>W1710507262
FMVC01000010
Bacteroidota
Flavobacterium anhuiense [FMVC]
63478
63559
+
Tyr
GTA
[ENA]
¡û
>W1710541056
FNYA01000002
Bacteroidota
Flavobacterium terrigena [FNYA]
209771
209688
-
Tyr
GTA
[ENA]
¡û
>W1710541062
FNYA01000004
Bacteroidota
Flavobacterium terrigena [FNYA]
32539
32456
-
Tyr
GTA
[ENA]
¡û
>W1710558999
FOMH01000004
Bacteroidota
Flavobacterium phragmitis [FOMH]
346381
346464
+
Tyr
GTA
[ENA]
¡û
>W1710559005
FOMH01000005
Bacteroidota
Flavobacterium phragmitis [FOMH]
308381
308298
-
Tyr
GTA
[ENA]
¡û
>W1710569862
FOUT01000007
Bacteroidota
Flavobacterium succinicans [FOUT]
39750
39667
-
Tyr
GTA
[ENA]
¡û
>W1710585126
FQWC01000010
Bacteroidota
Flavobacterium defluvii [FQWC]
50606
50525
-
Tyr
GTA
[ENA]
¡û
>W1710585297
FQWG01000014
Bacteroidota
Flavobacterium frigidimaris [FQWG]
161242
161325
+
Tyr
GTA
[ENA]
¡û
>W1710585349
FQWH01000007
Bacteroidota
Flavobacterium johnsoniae [FQWH]
123970
124051
+
Tyr
GTA
[ENA]
¡û
>W1710585727
FQWO01000007
Bacteroidota
Flavobacterium granuli [FQWO]
42368
42451
+
Tyr
GTA
[ENA]
¡û
>W1710589923
FRAO01000003
Bacteroidota
Flavobacterium johnsoniae [FRAO]
872794
872713
-
Tyr
GTA
[ENA]
¡û
>W1710591945
FRCC01000003
Bacteroidota
Flavobacterium flevense [FRCC]
187420
187337
-
Tyr
GTA
[ENA]
¡û
>W1710620395
JMTM01000017
Bacteroidota
Flavobacterium succinicans [JMTM]
618919
618836
-
Tyr
GTA
[ENA]
¡û
>W1710620425
JMTM01000074
Bacteroidota
Flavobacterium succinicans [JMTM]
45994
46077
+
Tyr
GTA
[ENA]
¡û
>W1710637082
JRLF01000001
Bacteroidota
Flavobacterium aquidurense [JRLF]
130876
130959
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK