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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218592 (25 seq.)
>W1710810714
LKHR01000014
Gammaproteobacteria
Vibrio fluvialis [LKHR]
50523
50606
+
Leu
GAG
[ENA]
¡û
>W1710810778
LKHS01000014
Gammaproteobacteria
Vibrio furnissii [LKHS]
157834
157917
+
Leu
GAG
[ENA]
¡û
>C171089282
CP019118
Gammaproteobacteria
Vibrio fluvialis 12605 [CP019118, CP019119]
482154
482237
+
Leu
GAG
-
¡û
>W131203112
ASXS01000025
Gammaproteobacteria
Vibrio fluvialis PG41 [ASXS]
81265
81348
+
Leu
GAG
[ENA]
¡û
>W131203140
ASXT01000012
Gammaproteobacteria
Vibrio fluvialis I21563 [ASXT]
81245
81328
+
Leu
GAG
[ENA]
¡û
>W131205617
ATEV01000129
Gammaproteobacteria
Vibrio paracholerae VCC19 [ATEV]
498
581
+
Leu
GAG
[ENA]
¡û
>WENV170658340
JTFP01090324
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
103
186
+
Leu
GAG
[ENA]
¢þ
>C181014520
CP014033
Gammaproteobacteria
Vibrio fluvialis FDAARGOS_100 [CP014032, CP014033]
2122670
2122753
+
Leu
GAG
-
¡û
>C191184607
CP040990
Gammaproteobacteria
Vibrio furnissii FDAARGOS_777 [CP040990, CP040991]
3147795
3147712
-
Leu
GAG
-
¡û
>W141815417
JQHW01000073
Gammaproteobacteria
Vibrio fluvialis 560 [JQHW]
132372
132289
-
Leu
GAG
[ENA]
¡û
>W1810110782
PHIF01000011
Gammaproteobacteria
Vibrio fluvialis QY27 [PHIF]
87431
87514
+
Leu
GAG
[ENA]
¡û
>SRA1004559
SRR006906.68441
metagenomic water samples (SRP000427)
131
48
-
Leu
GAG
[SRA]
>SRA1004695
SRR006906.105304
metagenomic water samples (SRP000427)
131
48
-
Leu
GAG
[SRA]
>W10107714
ACZP01000020
Gammaproteobacteria
Vibrio furnissii CIP 102972 [ACZP]
88253
88170
-
Leu
GAG
[ENA]
¡û
>W11110101
ACZP01000020
Gammaproteobacteria
Vibrio furnissii CIP 102972 [ACZP]
88253
88170
-
Leu
GAG
[ENA]
¡û
>W1511327177
JQHX01000060
Gammaproteobacteria
Vibrio fluvialis 539 [JQHX]
189
106
-
Leu
GAG
[ENA]
¡û
>W1511327187
JQHX01000062
Gammaproteobacteria
Vibrio fluvialis 539 [JQHX]
160882
160799
-
Leu
GAG
[ENA]
¡û
>W1511403717
JTLJ01000020
Gammaproteobacteria
Vibrio fluvialis ZOR0035 [JTLJ]
49399
49316
-
Leu
GAG
[ENA]
¡û
>C11123428
CP002377
Gammaproteobacteria
Vibrio furnissii NCTC 11218 [CP002377, CP002378]
973459
973542
+
Leu
GAG
[Ensembl]
¡û
>W1511517706
JXXQ01000036
Gammaproteobacteria
Vibrio fluvialis 3663 [JXXQ]
41747
41830
+
Leu
GAG
[ENA]
¡û
>C161065316
CP014035
Gammaproteobacteria
Vibrio fluvialis ATCC 33809 [CP014034, CP014035]
191018
191101
+
Leu
GAG
-
¡û
>W1610077719
BCZR01000008
Gammaproteobacteria
Vibrio fluvialis NBRC 103150 [BCZR]
87489
87406
-
Leu
GAG
[ENA]
¡û
>W1610674769
LKHR01000014
Gammaproteobacteria
Vibrio fluvialis [LKHR]
50523
50606
+
Leu
GAG
[ENA]
¡û
>W1610674833
LKHS01000014
Gammaproteobacteria
Vibrio furnissii [LKHS]
157834
157917
+
Leu
GAG
[ENA]
¡û
>W1710075357
BCZR01000008
Gammaproteobacteria
Vibrio fluvialis NBRC 103150 [BCZR]
87489
87406
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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