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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218644 (50 seq.)
>W1710912884
LNRZ01000004
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
37948
37872
-
Arg
ACG
[ENA]
¡û
>W1710912993
LNSB01000069
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
7186
7110
-
Arg
ACG
[ENA]
¡û
>W1710913036
LNSC01000079
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
10510
10586
+
Arg
ACG
[ENA]
¡û
>W1711224179
LXTV01000174
Alphaproteobacteria
Hyphomonas sp. ND6WE1B [LXTV]
6142
6066
-
Arg
ACG
[ENA]
¡û
>W1711386420
MEFH01000073
Alphaproteobacteria
Sphingopyxis sp. SCN 67-31 [MEFH]
25867
25791
-
Arg
ACG
[ENA]
¡û
>W1711407986
MGLM01000737
Alphaproteobacteria
Caulobacterales bacterium RIFOXYA1_FULL_67_7 [MGLM]
7461
7537
+
Arg
ACG
[ENA]
¡û
>W131220068
ATZB01000012
Alphaproteobacteria
Rhizobium sullae WSM1592 [ATZB]
76169
76093
-
Arg
ACG
[ENA]
¡û
>WENV180284678
OBID01085364
[OBID] metagenome; sludge
353
277
-
Arg
ACG
[ENA]
¢þ
>W08010808
ABRU01000008
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
96148
96224
+
Arg
ACG
[ENA]
¡û
>W141136062
AWFD01000008
Alphaproteobacteria
Hyphomonas sp. CY54-11-8 [AWFD]
77825
77901
+
Arg
ACG
[ENA]
¡û
>W141199833
AYXI01000014
Alphaproteobacteria
Defluviimonas sp. 20V17 [AYXI]
22615
22539
-
Arg
ACG
[ENA]
¡û
>WENV183729296
PJTQ01019364
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
96
20
-
Arg
ACG
[ENA]
¢þ
>WENV170200968
CEPP01020279
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6827
6903
+
Arg
ACG
[ENA]
¢þ
>WENV171002966
NKIC01000072
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
129
53
-
Arg
ACG
[ENA]
¢þ
>C191000368
AP017603
Alphaproteobacteria
Sphingopyxis sp. EG6 [AP017603]
1949603
1949527
-
Arg
ACG
-
¡û
>C191152291
CP036532
Alphaproteobacteria
Roseitalea porphyridii MA7-20 [CP036532]
855669
855593
-
Arg
ACG
-
¡û
>W141712466
JMQR01000180
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
552
628
+
Arg
ACG
[ENA]
¡û
>W141776118
JOKI01000039
Alphaproteobacteria
Pseudorhizobium pelagicum R1-200B2 [JOKI]
15648
15572
-
Arg
ACG
[ENA]
¡û
>W141776160
JOKJ01000045
Alphaproteobacteria
Pseudorhizobium pelagicum R2-400B4 [JOKJ]
15648
15572
-
Arg
ACG
[ENA]
¡û
>W141816494
JQJX01000002
Alphaproteobacteria
Rhizobium rhizogenes [JQJX]
805855
805779
-
Arg
ACG
[ENA]
¡û
>W1910004719
AWFE01000068
Alphaproteobacteria
Hyphomonas sp. GM-8P [AWFE]
5588
5512
-
Arg
ACG
[ENA]
¡û
>W1910441829
FWER01000009
Alphaproteobacteria
Rhizobium sullae [FWER]
144944
144868
-
Arg
ACG
[ENA]
¡û
>W1910549092
FZPA01000001
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
428664
428740
+
Arg
ACG
[ENA]
¡û
>W1910934229
NIWD01000002
Alphaproteobacteria
Sphingopyxis sp. GW247-27LB [NIWD]
400834
400910
+
Arg
ACG
[ENA]
¡û
>W1911538638
OMOQ01000001
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
40463
40539
+
Arg
ACG
[ENA]
¡û
>W1911551807
PCDP01000038
Alphaproteobacteria
Rhizobium tubonense CCBAU 85046 [PCDP]
263250
263174
-
Arg
ACG
[ENA]
¡û
>W1911551839
PCDQ01000011
Alphaproteobacteria
Rhizobium tumorigenes 1078 [PCDQ]
461663
461739
+
Arg
ACG
[ENA]
¡û
>W1911737869
QTTA01000020
Alphaproteobacteria
Brevundimonas halotolerans MCS24 [QTTA]
123734
123810
+
Arg
ACG
[ENA]
¡û
>W1810120362
PHSN01000029
Alphaproteobacteria
Acidimangrovimonas sediminis MS2-2 [PHSN]
27670
27746
+
Arg
ACG
[ENA]
¡û
>W1810147367
PIQN01000005
Alphaproteobacteria
Rhizobium sullae HCNT1 [PIQN]
408549
408625
+
Arg
ACG
[ENA]
¡û
>W1810195461
PKRO01000014
Alphaproteobacteria
Porphyrobacter sp. TH134 [PKRO]
48138
48214
+
Arg
ACG
[ENA]
¡û
>W1810268898
PRDS01000005
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
35511
35587
+
Arg
ACG
[ENA]
¡û
>W1810592089
QFWV01000006
Alphaproteobacteria
Oceaniradius stylonematis StC1 [QFWV]
7806
7730
-
Arg
ACG
[ENA]
¡û
>C151051502
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
2094939
2095015
+
Arg
ACG
-
¡û
>C151101629
HG938353
Alphaproteobacteria
Neorhizobium galegae bv. orientalis str. HAMBI 540 [HG938353]
70833
70909
+
Arg
ACG
[Ensembl]
¡û
>C151101677
HG938355
Alphaproteobacteria
Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI HAMBI 1141 [HG938355]
75480
75556
+
Arg
ACG
[Ensembl]
¡û
>W1510052904
CCRH01000001
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRH]
587451
587375
-
Arg
ACG
[ENA]
¡û
>W1510052993
CCRJ01000002
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRJ]
472553
472477
-
Arg
ACG
[ENA]
¡û
>W1511324677
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
584117
584041
-
Arg
ACG
[ENA]
¡û
>W1511433503
JUHG01000014
Alphaproteobacteria
Rhizobium rhizogenes OV677 [JUHG]
374071
374147
+
Arg
ACG
[ENA]
¡û
>C161040487
CP012199
Alphaproteobacteria
Sphingopyxis granuli TFA [CP012199]
1999801
1999877
+
Arg
ACG
[Ensembl]
¡û
>W121002990
AEYF01000044
Alphaproteobacteria
Rhizobium sp. CCGE 510 [AEYF]
440006
439930
-
Arg
ACG
[ENA]
¡û
>W1610071377
BCUA01000038
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
10902
10978
+
Arg
ACG
[ENA]
¡û
>W1610771243
LNRZ01000004
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
37948
37872
-
Arg
ACG
[ENA]
¡û
>W1610771352
LNSB01000069
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
7186
7110
-
Arg
ACG
[ENA]
¡û
>W1610771395
LNSC01000079
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
10510
10586
+
Arg
ACG
[ENA]
¡û
>W1611008550
LXTV01000174
Alphaproteobacteria
Hyphomonas sp. ND6WE1B [LXTV]
6142
6066
-
Arg
ACG
[ENA]
¡û
>WENV081013
ABEF01021568
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
222
144
-
Arg
ACG
[ENA]
>W1710068742
BCUA01000038
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
10902
10978
+
Arg
ACG
[ENA]
¡û
>W1710602891
FUYP01000013
Alphaproteobacteria
Sphingopyxis flava [FUYP]
48061
47985
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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