This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219129 (61 seq.)
>W1710797291
LJSX01000043
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
234
310
+
Trp
CCA
[ENA]
¡û
>W1710873121
LMMN01000058
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
6076
6152
+
Trp
CCA
[ENA]
¡û
>W1710874329
LMNN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
448127
448051
-
Trp
CCA
[ENA]
¡û
>W1710874422
LMNP01000005
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
356629
356553
-
Trp
CCA
[ENA]
¡û
>W1710874481
LMNQ01000012
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
6867
6943
+
Trp
CCA
[ENA]
¡û
>W1710874573
LMNS01000023
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
421789
421713
-
Trp
CCA
[ENA]
¡û
>W1710878277
LMQV01000001
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
132358
132282
-
Trp
CCA
[ENA]
¡û
>W1711078694
LSNC01000049
Alphaproteobacteria
Methylorubrum populi [LSNC]
147812
147736
-
Trp
CCA
[ENA]
¡û
>W1711179455
LWHQ01000087
Alphaproteobacteria
Methylobacterium platani [LWHQ]
20328
20252
-
Trp
CCA
[ENA]
¡û
>W131051721
AMXU01000022
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
7093
7017
-
Trp
CCA
[ENA]
¡û
>W131222251
AUBC01000016
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
165294
165218
-
Trp
CCA
[ENA]
¡û
>C171092167
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
2665511
2665435
-
Trp
CCA
-
¡û
>C171115177
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
411287
411363
+
Trp
CCA
-
¡û
>w001812
AAAP01001430
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
707
785
+
Trp
CCA
[ENA]
¡û
>WENV181233996
OFET01000670
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
16234
16158
-
Trp
CCA
[ENA]
¢þ
>WENV181234366
OFEU01000069
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
1330
1406
+
Trp
CCA
[ENA]
¢þ
>W08002389
ABEX01000002
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
287897
287824
-
Trp
CCA
[ENA]
¡û
>W08006168
ABIP01000065
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
18824
18751
-
Trp
CCA
[ENA]
¡û
>C08006499
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
4436594
4436670
+
Trp
CCA
[Ensembl]
¡û
>C08006646
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
4769031
4769107
+
Trp
CCA
[Ensembl]
¡û
>WENV170683269
LFIK01007978
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
3947
4023
+
Trp
CCA
[ENA]
¢þ
>C181000359
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
4620753
4620829
+
Trp
CCA
-
¡û
>W09106866
ABEC01000007
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
341416
341492
+
Trp
CCA
[ENA]
¡û
>C181175646
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
4629354
4629430
+
Trp
CCA
-
¡û
>C181180115
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
4918563
4918639
+
Trp
CCA
-
¡û
>C181227876
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
1380335
1380259
-
Trp
CCA
-
¡û
>W141821092
JQNH01000001
Alphaproteobacteria
Rhizobiales bacterium YIM 77505 [JQNH]
1874213
1874137
-
Trp
CCA
[ENA]
¡û
>C09107429
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
4606949
4607025
+
Trp
CCA
[Ensembl]
¡û
>C09107515
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
4886604
4886680
+
Trp
CCA
[Ensembl]
¡û
>C09107616
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
4471396
4471472
+
Trp
CCA
[Ensembl]
¡û
>W1911708576
QOWC01000157
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
160
236
+
Trp
CCA
[ENA]
¡û
>W1810079881
PELK01001268
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
1249
1173
-
Trp
CCA
[ENA]
¡û
>W1810658539
QJJJ01000006
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
164982
164906
-
Trp
CCA
[ENA]
¡û
>SRA1014826
SRR023845.331886
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
73
-1
-
Trp
CCA
[SRA]
>W1511507896
JXOD01000161
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
19155
19079
-
Trp
CCA
[ENA]
¡û
>W1511563221
LABX01000003
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
2133
2209
+
Trp
CCA
[ENA]
¡û
>W1511563333
LABY01000252
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
1715
1791
+
Trp
CCA
[ENA]
¡û
>W1511563353
LABZ01000061
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
18179
18103
-
Trp
CCA
[ENA]
¡û
>C161004975
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
4285355
4285431
+
Trp
CCA
[Ensembl]
¡û
>W1610042971
BAZM01000570
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
296
220
-
Trp
CCA
[ENA]
¡û
>W1610043197
BAZP01002513
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
202
278
+
Trp
CCA
[ENA]
¡û
>W121010661
AGJK01000015
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
1311
1387
+
Trp
CCA
[ENA]
¡û
>W1610516194
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
165043
164967
-
Trp
CCA
[ENA]
¡û
>W1610590491
LDRM01000053
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
34326
34250
-
Trp
CCA
[ENA]
¡û
>W1610590565
LDRN01000074
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
46005
45929
-
Trp
CCA
[ENA]
¡û
>W1610661248
LJSX01000043
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
234
310
+
Trp
CCA
[ENA]
¡û
>W1610735467
LMMN01000058
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
6076
6152
+
Trp
CCA
[ENA]
¡û
>W1610736675
LMNN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
448127
448051
-
Trp
CCA
[ENA]
¡û
>W1610736768
LMNP01000005
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
356629
356553
-
Trp
CCA
[ENA]
¡û
>W1610736827
LMNQ01000012
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
6867
6943
+
Trp
CCA
[ENA]
¡û
>W1610736919
LMNS01000023
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
421789
421713
-
Trp
CCA
[ENA]
¡û
>W1610740623
LMQV01000001
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
132358
132282
-
Trp
CCA
[ENA]
¡û
>W1610917604
LSNC01000049
Alphaproteobacteria
Methylorubrum populi [LSNC]
147812
147736
-
Trp
CCA
[ENA]
¡û
>W1610987356
LWHQ01000087
Alphaproteobacteria
Methylobacterium platani [LWHQ]
20328
20252
-
Trp
CCA
[ENA]
¡û
>W1710040131
BAZM01000570
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
296
220
-
Trp
CCA
[ENA]
¡û
>W1710040357
BAZP01002513
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
202
278
+
Trp
CCA
[ENA]
¡û
>W1710501485
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
165043
164967
-
Trp
CCA
[ENA]
¡û
>W1710548841
FOEB01000018
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
1338
1414
+
Trp
CCA
[ENA]
¡û
>W1710567564
FOSV01000026
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
46773
46697
-
Trp
CCA
[ENA]
¡û
>W1710709771
LDRM01000053
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
34326
34250
-
Trp
CCA
[ENA]
¡û
>W1710709845
LDRN01000074
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
46005
45929
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK