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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219139 (47 seq.)
>W1711126424
LUOO01000088
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
14995
14912
-
Leu
TAG
[ENA]
¡û
>W1711126443
LUOP01000001
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
956275
956192
-
Leu
TAG
[ENA]
¡û
>W1711642889
MPZR01000005
Alphaproteobacteria
Thioclava sp. F36-7 [MPZR]
109454
109371
-
Leu
TAG
[ENA]
¡û
>W1711642911
MPZS01000001
Alphaproteobacteria
Thioclava marina 11.10-0-13 [MPZS]
411194
411277
+
Leu
TAG
[ENA]
¡û
>W1711642975
MPZT01000003
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
123414
123331
-
Leu
TAG
[ENA]
¡û
>W1711643071
MPZV01000003
Alphaproteobacteria
Thioclava sediminum TAW-CT134 [MPZV]
518552
518635
+
Leu
TAG
[ENA]
¡û
>W1711643102
MPZW01000002
Alphaproteobacteria
Thioclava sp. L04-15 [MPZW]
455546
455629
+
Leu
TAG
[ENA]
¡û
>W1711709294
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
958625
958542
-
Leu
TAG
[ENA]
¡û
>W1711947193
NBNX01000001
Alphaproteobacteria
Thioclava sp. IC9 [NBNX]
218800
218717
-
Leu
TAG
[ENA]
¡û
>W1711947244
NBNY01000001
Alphaproteobacteria
Thioclava sp. F1Mire-8 [NBNY]
232104
232021
-
Leu
TAG
[ENA]
¡û
>W1711947306
NBNZ01000006
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
167155
167072
-
Leu
TAG
[ENA]
¡û
>W1711947321
NBOA01000001
Alphaproteobacteria
Thioclava sp. F34-6 [NBOA]
166589
166506
-
Leu
TAG
[ENA]
¡û
>W1711947367
NBOB01000001
Alphaproteobacteria
Thioclava sp. JM3 [NBOB]
548696
548779
+
Leu
TAG
[ENA]
¡û
>W131242020
BASI01000003
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
595997
596080
+
Leu
TAG
[ENA]
¡û
>C171094348
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
2560345
2560428
+
Leu
TAG
-
¡û
>C171105932
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
1694551
1694468
-
Leu
TAG
-
¡û
>C011068
CP000264
Alphaproteobacteria
Jannaschia sp. CCS1 [CP000264]
1489240
1489323
+
Leu
TAG
[Ensembl]
¡û
>W141082506
AUNB01000029
Alphaproteobacteria
Thioclava indica DT23-4 [AUNB]
6352
6269
-
Leu
TAG
[ENA]
¡û
>W141082580
AUND01000001
Alphaproteobacteria
Thioclava pacifica DSM 10166 [AUND]
654163
654080
-
Leu
TAG
[ENA]
¡û
>WENV182593049
OJIS01020986
[OJIS] seawater metagenome; Sea water
196
279
+
Leu
TAG
[ENA]
¢þ
>WENV170370147
CETR01067655
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
193
276
+
Leu
TAG
[ENA]
¢þ
>WENV170727342
LULE01000002
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
882379
882296
-
Leu
TAG
[ENA]
¢þ
>WENV170739326
LULQ01000271
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
14995
14912
-
Leu
TAG
[ENA]
¢þ
>WENV170806133
MDSW01077263
[MDSW] marine metagenome; seawater
3817
3734
-
Leu
TAG
[ENA]
¢þ
>C181052317
CP021404
Alphaproteobacteria
Pacificitalea manganoxidans DY25 [CP021404]
697728
697811
+
Leu
TAG
-
¡û
>C181123423
CP025815
Alphaproteobacteria
Sulfitobacter sp. JL08 [CP025815]
1737901
1737984
+
Leu
TAG
-
¡û
>W141531695
JHEH01000001
Alphaproteobacteria
Thioclava dalianensis [JHEH]
279944
280027
+
Leu
TAG
[ENA]
¡û
>W09102755
AAIG01000008
Alphaproteobacteria
Jannaschia sp. CCS1 [AAIG]
19079
19162
+
Leu
TAG
[ENA]
¡û
>W1911283647
NTJD01000009
Alphaproteobacteria
Pseudothioclava arenosa CAU 1312 [NTJD]
111743
111826
+
Leu
TAG
[ENA]
¡û
>W1911495102
OBMP01000002
Alphaproteobacteria
Rhodobacter sp. JA431 [OBMP]
342670
342753
+
Leu
TAG
[ENA]
¡û
>W1911575810
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
2302988
2303071
+
Leu
TAG
[ENA]
¡û
>W1810426262
PYWA01000005
Alphaproteobacteria
Paracoccus indicus IO390502 [PYWA]
56129
56212
+
Leu
TAG
[ENA]
¡û
>W1810464055
QAAA01000036
Alphaproteobacteria
Rhodovulum imhoffii DSM 18064 [QAAA]
478
395
-
Leu
TAG
[ENA]
¡û
>W1810486241
QAXT01000001
Alphaproteobacteria
Rhodobacter aestuarii JA296 [QAXT]
285560
285643
+
Leu
TAG
[ENA]
¡û
>W1810532477
QCYH01000006
Alphaproteobacteria
Pelagivirga sediminicola BH-SD19 [QCYH]
131418
131501
+
Leu
TAG
[ENA]
¡û
>W1810543582
QDKM01000001
Alphaproteobacteria
Pararhodobacter oceanensis AM505 [QDKM]
524541
524458
-
Leu
TAG
[ENA]
¡û
>W1810583979
QEYD01000005
Alphaproteobacteria
Pararhodobacter marinus CIC4N-9 [QEYD]
126013
126096
+
Leu
TAG
[ENA]
¡û
>W1810584524
QFBB01000003
Alphaproteobacteria
Thioclava sp. NG1 [QFBB]
351821
351904
+
Leu
TAG
[ENA]
¡û
>W1810667442
QJPK01000019
Alphaproteobacteria
Paracoccus sediminilitoris DSL-16 [QJPK]
63750
63833
+
Leu
TAG
[ENA]
¡û
>C161087729
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
3050672
3050755
+
Leu
TAG
-
¡û
>C161087778
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
3015144
3015227
+
Leu
TAG
[Ensembl]
¡û
>W1610937357
LUOO01000088
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
14995
14912
-
Leu
TAG
[ENA]
¡û
>W1610937376
LUOP01000001
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
956275
956192
-
Leu
TAG
[ENA]
¡û
>W1710015396
AQQQ01000003
Alphaproteobacteria
Roseovarius sp. 22II1-1F6A [AQQQ]
17111
17028
-
Leu
TAG
[ENA]
¡û
>W1710570323
FOVB01000005
Alphaproteobacteria
Thioclava dalianensis [FOVB]
91722
91639
-
Leu
TAG
[ENA]
¡û
>W1710598804
FTOG01000001
Alphaproteobacteria
Rhodobacter aestuarii [FTOG]
400030
399947
-
Leu
TAG
[ENA]
¡û
>W1710626835
JPKW01000006
Alphaproteobacteria
Paracoccus sp. SM22M-07 [JPKW]
124109
124026
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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