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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219171 (110 seq.)
>W131194989
ASRV01000019
Bacillota
Clostridium sartagoforme AAU1 [ASRV]
17797
17714
-
Leu
TAG
[ENA]
¡û
>W131195027
ASRV01000161
Bacillota
Clostridium sartagoforme AAU1 [ASRV]
256
173
-
Leu
TAG
[ENA]
¡û
>W131252500
CBML010000006
Bacillota
Clostridium chauvoei JF4335 [CBML]
20787
20870
+
Leu
TAG
[ENA]
¡û
>C171131120
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
321728
321811
+
Leu
TAG
-
¡û
>C171131156
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
2508049
2507966
-
Leu
TAG
-
¡û
>C171131164
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
2507345
2507262
-
Leu
TAG
-
¡û
>WENV180131446
OATG01031182
[OATG] human gut metagenome; faeces
571
488
-
Leu
TAG
[ENA]
¢þ
>WENV180133212
OATI01015058
[OATI] human gut metagenome; faeces
90
7
-
Leu
TAG
[ENA]
¢þ
>WENV180145592
OAUC01007288
[OAUC] human gut metagenome; faeces
67
150
+
Leu
TAG
[ENA]
¢þ
>WENV180180649
OAWL01000193
[OAWL] human gut metagenome; faeces
5540
5457
-
Leu
TAG
[ENA]
¢þ
>WENV180337597
OBLG01066968
[OBLG] human gut metagenome; human gut
320
237
-
Leu
TAG
[ENA]
¢þ
>WENV180415489
OBVE01000953
[OBVE] human gut metagenome; faeces
2636
2553
-
Leu
TAG
[ENA]
¢þ
>WENV180421967
OBVS01000026
[OBVS] human gut metagenome; faeces
72020
71937
-
Leu
TAG
[ENA]
¢þ
>WENV180445820
OBXA01029800
[OBXA] human gut metagenome; faeces
251
334
+
Leu
TAG
[ENA]
¢þ
>WENV180482793
OBZG01011071
[OBZG] human gut metagenome; faeces
581
664
+
Leu
TAG
[ENA]
¢þ
>WENV180491724
OBZV01065196
[OBZV] human gut metagenome; faeces
102
185
+
Leu
TAG
[ENA]
¢þ
>WENV180495105
OCAA01006047
[OCAA] human gut metagenome; faeces
2636
2553
-
Leu
TAG
[ENA]
¢þ
>WENV180529060
OCHJ01078811
[OCHJ] human gut metagenome; human gut
149
232
+
Leu
TAG
[ENA]
¢þ
>WENV180600139
OCPP01035052
[OCPP] human gut metagenome; faeces
254
171
-
Leu
TAG
[ENA]
¢þ
>WENV180629151
OCQP01041734
[OCQP] human gut metagenome; human gut
118
35
-
Leu
TAG
[ENA]
¢þ
>WENV180762386
ODHZ01120582
[ODHZ] human metagenome; G_DNA_Stool
185
102
-
Leu
TAG
[ENA]
¢þ
>W141083142
AUPH01002095
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
4
87
+
Leu
TAG
[ENA]
¡û
>WENV181345121
OFMK01029218
[OFMK] human gut metagenome; human gut
602
685
+
Leu
TAG
[ENA]
¢þ
>WENV181421353
OGCN01033987
[OGCN] human gut metagenome; human gut
1363
1280
-
Leu
TAG
[ENA]
¢þ
>WENV181642920
OGNH01000863
[OGNH] metagenome; Human gut stool
322
239
-
Leu
TAG
[ENA]
¢þ
>WENV181683113
OGOU01074528
[OGOU] human gut metagenome; faeces
184
101
-
Leu
TAG
[ENA]
¢þ
>WENV181707338
OGPL01017055
[OGPL] human gut metagenome; faeces
1991
2074
+
Leu
TAG
[ENA]
¢þ
>WENV181749679
OGQO01108650
[OGQO] human gut metagenome; faeces
418
501
+
Leu
TAG
[ENA]
¢þ
>WENV181753088
OGQQ01065389
[OGQQ] human gut metagenome; faeces
328
245
-
Leu
TAG
[ENA]
¢þ
>WENV181805887
OGSJ01001216
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
306
389
+
Leu
TAG
[ENA]
¢þ
>WENV181805932
OGSJ01001822
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
86
169
+
Leu
TAG
[ENA]
¢þ
>WENV181806022
OGSJ01005705
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
63
146
+
Leu
TAG
[ENA]
¢þ
>WENV181807705
OGSQ01000044
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
60100
60183
+
Leu
TAG
[ENA]
¢þ
>WENV181814856
OGTH01000656
[OGTH] human gut metagenome; fecal sample 4 from infant 6
187
104
-
Leu
TAG
[ENA]
¢þ
>WENV181819030
OGTU01008505
[OGTU] human gut metagenome; fecal sample 6 from infant 4
365
282
-
Leu
TAG
[ENA]
¢þ
>WENV182399368
OIEN01059014
[OIEN] human gut metagenome; human gut
114
197
+
Leu
TAG
[ENA]
¢þ
>WENV182405878
OIEX01000003
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
129057
129140
+
Leu
TAG
[ENA]
¢þ
>WENV182613856
OJKA01024703
[OJKA] metagenome; faeces
260
343
+
Leu
TAG
[ENA]
¢þ
>WENV182725631
OJPT01007935
[OJPT] human gut metagenome; stool sample
264
181
-
Leu
TAG
[ENA]
¢þ
>WENV182762630
OJRN01034955
[OJRN] human gut metagenome; stool sample
275
192
-
Leu
TAG
[ENA]
¢þ
>WENV182807199
OJVV01001610
[OJVV] human gut metagenome; human gut
1280
1197
-
Leu
TAG
[ENA]
¢þ
>WENV182813195
OJXZ01004306
[OJXZ] human gut metagenome; human gut
406
323
-
Leu
TAG
[ENA]
¢þ
>WENV182816576
OJZB01000414
[OJZB] human gut metagenome; human gut
2669
2586
-
Leu
TAG
[ENA]
¢þ
>WENV182828074
OKDE01010571
[OKDE] human gut metagenome; human gut
220
303
+
Leu
TAG
[ENA]
¢þ
>WENV182830329
OKDX01007865
[OKDX] human gut metagenome; human gut
361
278
-
Leu
TAG
[ENA]
¢þ
>WENV182832919
OKEP01001199
[OKEP] human gut metagenome; human gut
1131
1214
+
Leu
TAG
[ENA]
¢þ
>WENV182838342
OKGR01004418
[OKGR] human gut metagenome; human gut
508
425
-
Leu
TAG
[ENA]
¢þ
>WENV182838525
OKGS01003515
[OKGS] human gut metagenome; human gut
1709
1626
-
Leu
TAG
[ENA]
¢þ
>WENV182844263
OKIR01000205
[OKIR] human gut metagenome; human gut
12063
12146
+
Leu
TAG
[ENA]
¢þ
>WENV182849241
OKKO01004202
[OKKO] human gut metagenome; human gut
536
619
+
Leu
TAG
[ENA]
¢þ
>WENV182850932
OKLH01003116
[OKLH] human gut metagenome; human gut
305
388
+
Leu
TAG
[ENA]
¢þ
>WENV182855300
OKMY01004448
[OKMY] human gut metagenome; human gut
903
820
-
Leu
TAG
[ENA]
¢þ
>WENV182862821
OKPP01005980
[OKPP] human gut metagenome; human gut
1020
937
-
Leu
TAG
[ENA]
¢þ
>WENV182863568
OKPT01008949
[OKPT] human gut metagenome; human gut
222
305
+
Leu
TAG
[ENA]
¢þ
>WENV182864792
OKQE01002880
[OKQE] human gut metagenome; human gut
222
305
+
Leu
TAG
[ENA]
¢þ
>WENV182874811
OKRW01037985
[OKRW] human gut metagenome; faeces
242
159
-
Leu
TAG
[ENA]
¢þ
>WENV182952764
OKVW01017996
[OKVW] human gut metagenome; human gut
328
411
+
Leu
TAG
[ENA]
¢þ
>WENV182963292
OKWQ01000060
[OKWQ] human gut metagenome; stool
50822
50739
-
Leu
TAG
[ENA]
¢þ
>WENV183065723
OLIJ01008312
[OLIJ] metagenome; faeces
238
155
-
Leu
TAG
[ENA]
¢þ
>WENV183129864
OLOA01000323
[OLOA] human gut metagenome; faeces
52123
52206
+
Leu
TAG
[ENA]
¢þ
>WENV183142054
OLOJ01065332
[OLOJ] human gut metagenome; faeces
307
390
+
Leu
TAG
[ENA]
¢þ
>WENV183160164
OLOU01068744
[OLOU] human gut metagenome; faeces
218
301
+
Leu
TAG
[ENA]
¢þ
>WENV183327720
OLWA01001615
[OLWA] human gut metagenome; faeces
21720
21803
+
Leu
TAG
[ENA]
¢þ
>WENV183433274
OMBT01012085
[OMBT] human gut metagenome; feces
597
514
-
Leu
TAG
[ENA]
¢þ
>WENV183520198
OMNT01007088
[OMNT] human gut metagenome; faeces
6093
6010
-
Leu
TAG
[ENA]
¢þ
>WENV183522887
ONZR01006952
[ONZR] human gut metagenome; human gut
916
999
+
Leu
TAG
[ENA]
¢þ
>WENV183594549
OODB01056818
[OODB] human gut metagenome; human gut
159
76
-
Leu
TAG
[ENA]
¢þ
>WENV183651113
OQVT01076185
[OQVT] human gut metagenome; human gut
948
865
-
Leu
TAG
[ENA]
¢þ
>C181031735
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
116907
116990
+
Leu
TAG
-
¡û
>C181031743
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
117611
117694
+
Leu
TAG
-
¡û
>C181031799
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
2299907
2299824
-
Leu
TAG
-
¡û
>C181031994
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2770160
2770077
-
Leu
TAG
-
¡û
>C181032007
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2705197
2705114
-
Leu
TAG
-
¡û
>C181032015
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2704493
2704410
-
Leu
TAG
-
¡û
>C191025623
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
2159346
2159429
+
Leu
TAG
-
¡û
>C191025631
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
2160058
2160141
+
Leu
TAG
-
¡û
>C191051236
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
321728
321811
+
Leu
TAG
-
¡û
>C191051272
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
2504298
2504215
-
Leu
TAG
-
¡û
>C191051280
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
2503594
2503511
-
Leu
TAG
-
¡û
>C191123815
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
955955
956038
+
Leu
TAG
-
¡û
>C191123822
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
956666
956749
+
Leu
TAG
-
¡û
>W09118941
ACDK01000006
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
18238
18321
+
Leu
TAG
[ENA]
¡û
>W09118992
ACDK01000132
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
265
182
-
Leu
TAG
[ENA]
¡û
>W1911493909
OBJV01000001
Bacillota
Clostridium tertium [OBJV]
127485
127568
+
Leu
TAG
[ENA]
¡û
>W1911493968
OBJV01000016
Bacillota
Clostridium tertium [OBJV]
4665
4582
-
Leu
TAG
[ENA]
¡û
>W1911493975
OBJV01000016
Bacillota
Clostridium tertium [OBJV]
4070
3987
-
Leu
TAG
[ENA]
¡û
>W1911493994
OBJV01000044
Bacillota
Clostridium tertium [OBJV]
107
24
-
Leu
TAG
[ENA]
¡û
>W1810470664
QAEJ01000101
Bacillota
Bacillus anthracis A155 [QAEJ]
723
806
+
Leu
TAG
[ENA]
¡û
>W1810604941
QGMU01000017
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
12228
12145
-
Leu
TAG
[ENA]
¡û
>W1810604979
QGMU01000038
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
4100
4017
-
Leu
TAG
[ENA]
¡û
>W1810605041
QGMV01000018
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
266
183
-
Leu
TAG
[ENA]
¡û
>W1810605045
QGMV01000021
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
34220
34303
+
Leu
TAG
[ENA]
¡û
>W1511595443
LBMX01000012
Bacillota
Clostridium sp. C8 [LBMX]
42198
42281
+
Leu
TAG
[ENA]
¡û
>W1511595454
LBMX01000013
Bacillota
Clostridium sp. C8 [LBMX]
6572
6655
+
Leu
TAG
[ENA]
¡û
>W1610501288
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
24811
24728
-
Leu
TAG
[ENA]
¡û
>W1610501295
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
24190
24107
-
Leu
TAG
[ENA]
¡û
>W1610501302
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
23569
23486
-
Leu
TAG
[ENA]
¡û
>W1610501309
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
22948
22865
-
Leu
TAG
[ENA]
¡û
>W1610501316
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
22327
22244
-
Leu
TAG
[ENA]
¡û
>W1610501334
FLKB01000019
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
107
24
-
Leu
TAG
[ENA]
¡û
>W1610507746
FLTT01000018
Bacillota
Clostridium septicum [FLTT]
57694
57777
+
Leu
TAG
[ENA]
¡û
>W1610507754
FLTT01000018
Bacillota
Clostridium septicum [FLTT]
58406
58489
+
Leu
TAG
[ENA]
¡û
>W1710494758
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
24811
24728
-
Leu
TAG
[ENA]
¡û
>W1710494765
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
24190
24107
-
Leu
TAG
[ENA]
¡û
>W1710494772
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
23569
23486
-
Leu
TAG
[ENA]
¡û
>W1710494779
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
22948
22865
-
Leu
TAG
[ENA]
¡û
>W1710494786
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
22327
22244
-
Leu
TAG
[ENA]
¡û
>W1710494804
FLKB01000019
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
107
24
-
Leu
TAG
[ENA]
¡û
>W1710499964
FLTT01000018
Bacillota
Clostridium septicum [FLTT]
57694
57777
+
Leu
TAG
[ENA]
¡û
>W1710499972
FLTT01000018
Bacillota
Clostridium septicum [FLTT]
58406
58489
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK