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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219187 (93 seq.)
>W1711069864
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
87684
87760
+
Met
CAT
[ENA]
¡û
>W1711069876
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
88733
88809
+
Met
CAT
[ENA]
¡û
>W1711069914
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1844597
1844673
+
Met
CAT
[ENA]
¡û
>W1711069935
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1846434
1846510
+
Met
CAT
[ENA]
¡û
>W1711903014
MZGW01000017
Bacillota
[Clostridium] thermoalcaliphilum [MZGW]
4732
4656
-
Met
CAT
[ENA]
¡û
>W1711903021
MZGW01000022
Bacillota
[Clostridium] thermoalcaliphilum [MZGW]
1433
1357
-
Met
CAT
[ENA]
¡û
>W1711903033
MZGW01000022
Bacillota
[Clostridium] thermoalcaliphilum [MZGW]
392
316
-
Met
CAT
[ENA]
¡û
>C171064296
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2954178
2954254
+
Met
CAT
-
¡û
>C171064327
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
708959
708883
-
Met
CAT
-
¡û
>C171064335
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
702632
702556
-
Met
CAT
-
¡û
>C171109243
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1760003
1760079
+
Met
CAT
-
¡û
>C171109269
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4101511
4101435
-
Met
CAT
-
¡û
>C171109277
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4095184
4095108
-
Met
CAT
-
¡û
>WENV180096551
MTBK01135504
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
954
878
-
Ile2
CAT
[ENA]
¢þ
>WENV180098095
MTBK01227307
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1456
1532
+
Ile2
CAT
[ENA]
¢þ
>WENV180728478
ODGU01052433
[ODGU] human metagenome; G_DNA_Supragingival plaque
927
1003
+
Ile2
CAT
[ENA]
¢þ
>WENV180739443
ODHD01092640
[ODHD] human metagenome; G_DNA_Supragingival plaque
114
190
+
Ile2
CAT
[ENA]
¢þ
>WENV180751817
ODHS01188365
[ODHS] human metagenome; G_DNA_Supragingival plaque
97
173
+
Ile2
CAT
[ENA]
¢þ
>WENV180776769
ODIK01128780
[ODIK] human metagenome; G_DNA_Tongue dorsum
98
174
+
Ile2
CAT
[ENA]
¢þ
>WENV180777611
ODIL01027216
[ODIL] human metagenome; G_DNA_Supragingival plaque
354
430
+
Ile2
CAT
[ENA]
¢þ
>WENV180788574
ODIS01077998
[ODIS] human metagenome; G_DNA_Supragingival plaque
241
317
+
Ile2
CAT
[ENA]
¢þ
>WENV180791295
ODIT01230853
[ODIT] human metagenome; G_DNA_Tongue dorsum
111
187
+
Ile2
CAT
[ENA]
¢þ
>WENV180797890
ODJB01155761
[ODJB] human metagenome; G_DNA_Supragingival plaque
241
317
+
Ile2
CAT
[ENA]
¢þ
>WENV180807954
ODJI01022237
[ODJI] human metagenome; G_DNA_Tongue dorsum
429
505
+
Ile2
CAT
[ENA]
¢þ
>WENV180814980
ODJO01154519
[ODJO] human metagenome; G_DNA_Supragingival plaque
151
227
+
Ile2
CAT
[ENA]
¢þ
>WENV180824940
ODJX01111703
[ODJX] human metagenome; G_DNA_Supragingival plaque
144
220
+
Ile2
CAT
[ENA]
¢þ
>WENV180833059
ODKC01012297
[ODKC] human metagenome; G_DNA_Supragingival plaque
1455
1379
-
Ile2
CAT
[ENA]
¢þ
>WENV180833436
ODKC01049960
[ODKC] human metagenome; G_DNA_Supragingival plaque
71
147
+
Ile2
CAT
[ENA]
¢þ
>WENV180834721
ODKD01133750
[ODKD] human metagenome; G_DNA_Supragingival plaque
38
114
+
Ile2
CAT
[ENA]
¢þ
>WENV180844138
ODKN01040680
[ODKN] human metagenome; G_DNA_Supragingival plaque
130
206
+
Ile2
CAT
[ENA]
¢þ
>WENV180847455
ODKT01085357
[ODKT] human metagenome; G_DNA_Supragingival plaque
468
544
+
Ile2
CAT
[ENA]
¢þ
>WENV180923369
ODTJ01142970
[ODTJ] human metagenome; G_DNA_Supragingival plaque
108
32
-
Ile2
CAT
[ENA]
¢þ
>WENV180925309
ODTK01084598
[ODTK] human metagenome; G_DNA_Supragingival plaque
5
81
+
Ile2
CAT
[ENA]
¢þ
>WENV180928496
ODTM01065274
[ODTM] human metagenome; G_DNA_Supragingival plaque
481
405
-
Ile2
CAT
[ENA]
¢þ
>WENV180932153
ODTP01027790
[ODTP] human metagenome; G_DNA_Tongue dorsum
126
202
+
Ile2
CAT
[ENA]
¢þ
>WENV180935235
ODTS01133056
[ODTS] human metagenome; G_DNA_Subgingival plaque
36
112
+
Ile2
CAT
[ENA]
¢þ
>WENV180939245
ODTX01021563
[ODTX] human metagenome; G_DNA_Supragingival plaque
604
528
-
Ile2
CAT
[ENA]
¢þ
>WENV180939247
ODTX01021563
[ODTX] human metagenome; G_DNA_Supragingival plaque
432
356
-
Ile2
CAT
[ENA]
¢þ
>WENV180945447
ODUC01158387
[ODUC] human metagenome; G_DNA_Supragingival plaque
126
50
-
Ile2
CAT
[ENA]
¢þ
>WENV180974229
ODUW01142165
[ODUW] human metagenome; G_DNA_Supragingival plaque
151
227
+
Ile2
CAT
[ENA]
¢þ
>WENV180991231
ODVN01029372
[ODVN] human metagenome; G_DNA_Tongue dorsum
84
160
+
Ile2
CAT
[ENA]
¢þ
>WENV181004222
ODVX01160445
[ODVX] human metagenome; G_DNA_Supragingival plaque
84
160
+
Ile2
CAT
[ENA]
¢þ
>WENV181009268
ODWE01045452
[ODWE] human metagenome; G_DNA_Supragingival plaque
88
164
+
Ile2
CAT
[ENA]
¢þ
>WENV181051225
ODYD01284202
[ODYD] human metagenome; G_DNA_Supragingival plaque
132
56
-
Ile2
CAT
[ENA]
¢þ
>WENV181060377
ODYM01150428
[ODYM] human metagenome; G_DNA_Tongue dorsum
113
189
+
Ile2
CAT
[ENA]
¢þ
>WENV181065000
ODYP01208908
[ODYP] human metagenome; G_DNA_Supragingival plaque
37
113
+
Ile2
CAT
[ENA]
¢þ
>WENV181077479
OEAP01062465
[OEAP] human metagenome; G_DNA_Supragingival plaque
682
758
+
Ile2
CAT
[ENA]
¢þ
>WENV181077587
OEAP01081750
[OEAP] human metagenome; G_DNA_Supragingival plaque
71
147
+
Ile2
CAT
[ENA]
¢þ
>WENV181079664
OEAS01011588
[OEAS] human metagenome; G_DNA_Supragingival plaque
3378
3302
-
Ile2
CAT
[ENA]
¢þ
>WENV181079666
OEAS01011588
[OEAS] human metagenome; G_DNA_Supragingival plaque
3204
3128
-
Ile2
CAT
[ENA]
¢þ
>WENV181084169
OEAV01086259
[OEAV] human metagenome; G_DNA_Supragingival plaque
151
227
+
Ile2
CAT
[ENA]
¢þ
>WENV181146719
OEHQ01019552
[OEHQ] human metagenome; G_DNA_Supragingival plaque
161
237
+
Ile2
CAT
[ENA]
¢þ
>WENV181153559
OEIA01138293
[OEIA] human metagenome; G_DNA_Supragingival plaque
194
118
-
Ile2
CAT
[ENA]
¢þ
>WENV181182816
OEJV01052766
[OEJV] human metagenome; G_DNA_Supragingival plaque
469
393
-
Ile2
CAT
[ENA]
¢þ
>WENV170693830
LGVC01088473
[LGVC] marine sediment metagenome; sample #5133, Elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive
109
33
-
Met
CAT
[ENA]
¢þ
>WENV170697566
LGVF01154848
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1198
1274
+
Met
CAT
[ENA]
¢þ
>W1910548239
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
175287
175211
-
Met
CAT
[ENA]
¡û
>W1910548280
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
1280
1356
+
Met
CAT
[ENA]
¡û
>W1910665357
MCHZ01000009
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
1898
1974
+
Met
CAT
[ENA]
¡û
>W1910665372
MCHZ01000011
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
501
425
-
Met
CAT
[ENA]
¡û
>W1910665386
MCHZ01000013
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
18411
18487
+
Met
CAT
[ENA]
¡û
>W1910665404
MCHZ01000030
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
858
934
+
Met
CAT
[ENA]
¡û
>C151057263
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1598267
1598343
+
Met
CAT
[Ensembl]
¡û
>W1511527534
JYHU01000004
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
267428
267504
+
Met
CAT
[ENA]
¡û
>C161076021
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
832703
832779
+
Met
CAT
[Ensembl]
¡û
>C161076070
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
845343
845419
+
Met
CAT
[Ensembl]
¡û
>W121007132
AFZE01000022
Bacillota
Peptoanaerobacter stomatis ACC19a [AFZE]
1563
1639
+
Met
CAT
[ENA]
¡û
>W121007157
AFZE01000044
Bacillota
Peptoanaerobacter stomatis ACC19a [AFZE]
1717
1793
+
Met
CAT
[ENA]
¡û
>W121007220
AFZG01000002
Bacillota
Peptoanaerobacter stomatis CM5 [AFZG]
115771
115695
-
Met
CAT
[ENA]
¡û
>W121007249
AFZG01000082
Bacillota
Peptoanaerobacter stomatis CM5 [AFZG]
1749
1825
+
Met
CAT
[ENA]
¡û
>W121111536
ALJM01000028
Bacillota
Peptostreptococcaceae bacterium AS15 AS15 [ALJM]
957
1033
+
Met
CAT
[ENA]
¡û
>W121112583
ALNK01000029
Bacillota
Peptoanaerobacter stomatis OBRC8 [ALNK]
1663
1739
+
Met
CAT
[ENA]
¡û
>W1610043715
BAZZ01000006
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
158081
158157
+
Met
CAT
[ENA]
¡û
>C131011904
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
835917
835993
+
Met
CAT
-
¡û
>W1610910392
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
87684
87760
+
Met
CAT
[ENA]
¡û
>W1610910404
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
88733
88809
+
Met
CAT
[ENA]
¡û
>W1610910442
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1844597
1844673
+
Met
CAT
[ENA]
¡û
>W1610910463
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1846434
1846510
+
Met
CAT
[ENA]
¡û
>W1710040875
BAZZ01000006
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
158081
158157
+
Met
CAT
[ENA]
¡û
>W1710520437
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
541115
541039
-
Met
CAT
[ENA]
¡û
>W1710532274
FNQE01000017
Bacillota
Proteiniborus ethanoligenes [FNQE]
75024
74948
-
Met
CAT
[ENA]
¡û
>W1710587063
FQXR01000021
Bacillota
Sporanaerobacter acetigenes DSM 13106 [FQXR]
873
949
+
Met
CAT
[ENA]
¡û
>W1710587067
FQXR01000021
Bacillota
Sporanaerobacter acetigenes DSM 13106 [FQXR]
1248
1324
+
Met
CAT
[ENA]
¡û
>W1710589556
FRAG01000123
Bacillota
Paramaledivibacter caminithermalis DSM 15212 [FRAG]
140
216
+
Met
CAT
[ENA]
¡û
>W1710589560
FRAG01000123
Bacillota
Paramaledivibacter caminithermalis DSM 15212 [FRAG]
872
948
+
Met
CAT
[ENA]
¡û
>W1710589688
FRAJ01000008
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
136145
136069
-
Met
CAT
[ENA]
¡û
>W1710589704
FRAJ01000024
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
27516
27440
-
Met
CAT
[ENA]
¡û
>W1710604137
FUZS01000023
Bacillota
[Eubacterium] yurii [FUZS]
35289
35213
-
Met
CAT
[ENA]
¡û
>W1710604155
FUZS01000036
Bacillota
[Eubacterium] yurii [FUZS]
1384
1460
+
Met
CAT
[ENA]
¡û
>W1710604168
FUZT01000001
Bacillota
Maledivibacter halophilus [FUZT]
222606
222682
+
Met
CAT
[ENA]
¡û
>W1710604196
FUZT01000025
Bacillota
Maledivibacter halophilus [FUZT]
307
383
+
Met
CAT
[ENA]
¡û
>W1710604200
FUZT01000025
Bacillota
Maledivibacter halophilus [FUZT]
947
1023
+
Met
CAT
[ENA]
¡û
>W1710604209
FUZT01000029
Bacillota
Maledivibacter halophilus [FUZT]
4412
4336
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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