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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219509 (64 seq.)
>W1710796695
LJSI01000024
Gammaproteobacteria
Neptunomonas antarctica [LJSI]
391
315
-
Ile
GAT
[ENA]
¡û
>W1710806162
LKAS01000002
Gammaproteobacteria
bacterium endosymbiont of Pedicinus badii [LKAS]
125713
125788
+
Ile
GAT
[ENA]
¡û
>W1710858626
LMBL01000014
Gammaproteobacteria
Enterobacter hormaechei cloacae [LMBL]
86653
86577
-
Ile
GAT
[ENA]
¡û
>W1711129009
LUTR01000055
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
1
77
+
Ile
GAT
[ENA]
¡û
>W1711129014
LUTR01000071
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
1
77
+
Ile
GAT
[ENA]
¡û
>W1711129017
LUTR01000117
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
77
1
-
Ile
GAT
[ENA]
¡û
>W1711129072
LUTS01000098
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
1
77
+
Ile
GAT
[ENA]
¡û
>W1711129076
LUTS01000125
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
1
77
+
Ile
GAT
[ENA]
¡û
>W1711129078
LUTS01000203
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
129
205
+
Ile
GAT
[ENA]
¡û
>W1711425141
MIEQ01000058
Gammaproteobacteria
Motiliproteus sp. MSK22-1 [MIEQ]
461
385
-
Ile
GAT
[ENA]
¡û
>W1711666900
MRCJ01000027
Gammaproteobacteria
Neptunomonas phycophila [MRCJ]
385
309
-
Ile
GAT
[ENA]
¡û
>W1711711638
MTBA01000026
Gammaproteobacteria
Oceanospirillum sanctuarii AK56 [MTBA]
151
227
+
Ile
GAT
[ENA]
¡û
>W1711711640
MTBA01000028
Gammaproteobacteria
Oceanospirillum sanctuarii AK56 [MTBA]
119
195
+
Ile
GAT
[ENA]
¡û
>W1711726850
MTSD02000021
Gammaproteobacteria
Oceanospirillum linum [MTSD]
478
554
+
Ile
GAT
[ENA]
¡û
>W1711726852
MTSD02000279
Gammaproteobacteria
Oceanospirillum linum [MTSD]
107
31
-
Ile
GAT
[ENA]
¡û
>W1711726853
MTSD02000280
Gammaproteobacteria
Oceanospirillum linum [MTSD]
247
171
-
Ile
GAT
[ENA]
¡û
>W1711726854
MTSD02000282
Gammaproteobacteria
Oceanospirillum linum [MTSD]
247
171
-
Ile
GAT
[ENA]
¡û
>W1711726956
MTSM01000043
Gammaproteobacteria
Oceanospirillum multiglobuliferum [MTSM]
1943
2019
+
Ile
GAT
[ENA]
¡û
>C171130368
LT635893
Gammaproteobacteria
Buchnera aphidicola Bcipseudotaxifoliae [LT635893]
197554
197630
+
Ile
GAT
-
¡û
>C171130399
LT667500
Gammaproteobacteria
Buchnera aphidicola BCifornacula [LT667500]
195740
195816
+
Ile
GAT
-
¡û
>C171130430
LT667503
Gammaproteobacteria
Buchnera aphidicola Bciconfinis [LT667503]
196238
196314
+
Ile
GAT
-
¡û
>C001836
CP000263
Gammaproteobacteria
Buchnera aphidicola BCc [CP000263]
185096
185169
+
Ile
GAT
[Ensembl]
¡û
>C002744
BX248583
Gammaproteobacteria
Candidatus Blochmannia floridanus [BX248583]
705085
705012
-
Ile
GAT
[Ensembl]
¡û
>W141182513
AYIE01000002
Gammaproteobacteria
Enterobacter hormaechei UCICRE 11 [AYIE]
1122753
1122677
-
Ile
GAT
[ENA]
¡û
>WENV182541200
OJAS01004959
[OJAS] seawater metagenome; Sea water
570
494
-
Ile
GAT
[ENA]
¢þ
>WENV183057580
OLHL01012027
[OLHL] seawater metagenome; Sea water
107
183
+
Ile
GAT
[ENA]
¢þ
>WENV183718995
PDWJ01008583
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
448
372
-
Ile
GAT
[ENA]
¢þ
>WENV170655684
JTFN01057647
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
117
193
+
Ile
GAT
[ENA]
¢þ
>WENV170657245
JTFO01110143
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
89
13
-
Ile
GAT
[ENA]
¢þ
>WENV170657914
JTFP01032889
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
117
193
+
Ile
GAT
[ENA]
¢þ
>WENV170780720
MAAB01017369
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1543
1467
-
Ile
GAT
[ENA]
¢þ
>C181139797
CP026766
Gammaproteobacteria
Shigella boydii 59-248 [CP026766]
3434223
3434299
+
Ile
GAT
-
¡û
>C181177930
CP029388
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae SCKP040074 [CP029388]
3606174
3606250
+
Ile
GAT
-
¡û
>C181177938
CP029388
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae SCKP040074 [CP029388]
3698048
3698124
+
Ile
GAT
-
¡û
>C181220972
LT897836
Gammaproteobacteria
Sodalis endosymbiont of Henestaris halophilus [LT897836]
577624
577548
-
Ile
GAT
-
¡û
>C191219765
LR217713
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCicurvipes [LR217713]
1038622
1038546
-
Ile
GAT
-
¡û
>C191219837
LR217720
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCilaricifoliae [LR217720]
1025657
1025581
-
Ile
GAT
-
¡û
>C191219908
LR217730
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCipseudotsugae [LR217730]
1010786
1010710
-
Ile
GAT
-
¡û
>W1910208856
FLWH01000016
Gammaproteobacteria
Klebsiella pneumoniae PB486 [FLWH]
84760
84836
+
Ile
GAT
[ENA]
¡û
>W1911037918
NLYC01000152
Gammaproteobacteria
Escherichia coli MOD1-EC6420 [NLYC]
319
243
-
Ile
GAT
[ENA]
¡û
>W1810369574
PWAL01000039
Gammaproteobacteria
Klebsiella pneumoniae SCKP040073 [PWAL]
151
227
+
Ile
GAT
[ENA]
¡û
>C11102178
CP001817
Gammaproteobacteria
Buchnera aphidicola [Cinara tujafilina] [CP001817]
196423
196499
+
Ile
GAT
[Ensembl]
¡û
>C121010738
CP003315
Gammaproteobacteria
Wigglesworthia glossinidia endosymbiont of Glossina morsitans [CP003315]
157202
157277
+
Ile
GAT
-
¡û
>C161091183
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
4535926
4535850
-
Ile
GAT
[Ensembl]
¡û
>C161091190
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
3999949
3999873
-
Ile
GAT
[Ensembl]
¡û
>C161107303
LN890285
Gammaproteobacteria
Buchnera aphidicola BTs [LN890285]
189802
189878
+
Ile
GAT
-
¡û
>W121052899
AIGS01000001
Gammaproteobacteria
Escherichia coli DEC10D [AIGS]
114772
114848
+
Ile
GAT
[ENA]
¡û
>W1610062679
BCNS01000065
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
519
443
-
Ile
GAT
[ENA]
¡û
>W1610062681
BCNS01000066
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
561
485
-
Ile
GAT
[ENA]
¡û
>W1610493138
FLFT01000021
Gammaproteobacteria
Klebsiella pneumoniae [FLFT]
97369
97445
+
Ile
GAT
[ENA]
¡û
>W1610510023
FLWB01000033
Gammaproteobacteria
Klebsiella pneumoniae PB484 [FLWB]
328
252
-
Ile
GAT
[ENA]
¡û
>W1610660652
LJSI01000024
Gammaproteobacteria
Neptunomonas antarctica [LJSI]
391
315
-
Ile
GAT
[ENA]
¡û
>W1610720972
LMBL01000014
Gammaproteobacteria
Enterobacter hormaechei cloacae [LMBL]
86653
86577
-
Ile
GAT
[ENA]
¡û
>W1610940082
LUTR01000055
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
1
77
+
Ile
GAT
[ENA]
¡û
>W1610940087
LUTR01000071
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
1
77
+
Ile
GAT
[ENA]
¡û
>W1610940090
LUTR01000117
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
77
1
-
Ile
GAT
[ENA]
¡û
>W1610940145
LUTS01000098
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
1
77
+
Ile
GAT
[ENA]
¡û
>W1610940149
LUTS01000125
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
1
77
+
Ile
GAT
[ENA]
¡û
>W1610940151
LUTS01000203
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
129
205
+
Ile
GAT
[ENA]
¡û
>W1710060155
BCNS01000065
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
519
443
-
Ile
GAT
[ENA]
¡û
>W1710060157
BCNS01000066
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
561
485
-
Ile
GAT
[ENA]
¡û
>W1710486608
FLFT01000021
Gammaproteobacteria
Klebsiella pneumoniae [FLFT]
97369
97445
+
Ile
GAT
[ENA]
¡û
>W1710541419
FNYH01000024
Gammaproteobacteria
Allopseudospirillum japonicum [FNYH]
1995
2071
+
Ile
GAT
[ENA]
¡û
>W1710601422
FUXG01000043
Gammaproteobacteria
Oceanospirillum multiglobuliferum [FUXG]
3520
3444
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK