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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21965 (50 seq.)
>W1710777936
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
36143
36053
-
Ser
TGA
[ENA]
¡û
>W1710892052
LNDJ01000024
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
42535
42445
-
Ser
TGA
[ENA]
¡û
>W1710915835
LNUO01000001
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
18679
18769
+
Ser
TGA
[ENA]
¡û
>W1711303130
MAJM01000004
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
526661
526571
-
Ser
TGA
[ENA]
¡û
>C171131088
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
2485872
2485782
-
Ser
TGA
-
¡û
>C015830
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1988031
1987941
-
Ser
TGA
[Ensembl]
¡û
>C015992
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
2272542
2272452
-
Ser
TGA
[Ensembl]
¡û
>WENV180101039
OAOU01000019
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
18853
18763
-
Ser
TGA
[ENA]
¢þ
>WENV180101087
OAOU01000343
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
1633
1543
-
Ser
TGA
[ENA]
¢þ
>WENV180101161
OAOU01002614
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
1689
1599
-
Ser
TGA
[ENA]
¢þ
>w003227
AADI01000004
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
80484
80392
-
Ser
TGA
[ENA]
¡û
>W141086185
AUSW01000031
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
9685
9595
-
Ser
TGA
[ENA]
¡û
>W141199972
AYXM01000081
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
163071
162981
-
Ser
TGA
[ENA]
¡û
>W141200512
AYXZ01000078
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
9815
9725
-
Ser
TGA
[ENA]
¡û
>W141200552
AYYA01000004
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
148335
148245
-
Ser
TGA
[ENA]
¡û
>C08007227
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1988031
1987944
-
Ser
TGA
[Ensembl]
¡û
>W141233990
BAWG01000018
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
9683
9773
+
Ser
TGA
[ENA]
¡û
>WENV182542192
OJAV01008242
[OJAV] seawater metagenome; Sea water
807
897
+
Ser
TGA
[ENA]
¢þ
>WENV182549817
OJBZ01000065
[OJBZ] seawater metagenome; Sea water
19281
19191
-
Ser
TGA
[ENA]
¢þ
>WENV182562315
OJDZ01000757
[OJDZ] seawater metagenome; Sea water
9230
9140
-
Ser
TGA
[ENA]
¢þ
>WENV170014710
AYSL01006143
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
669
759
+
Ser
TGA
[ENA]
¢þ
>WENV170290639
CESA01035457
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
848
758
-
Ser
TGA
[ENA]
¢þ
>WENV170379943
CETV01259862
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
329
239
-
Ser
TGA
[ENA]
¢þ
>WENV170579684
FUFK010040363
[FUFK] metagenome; unknown
2639
2549
-
Ser
TGA
[ENA]
¢þ
>WENV170579891
FUFK010042228
[FUFK] metagenome; unknown
8764
8854
+
Ser
TGA
[ENA]
¢þ
>WENV170590714
FUFK010732348
[FUFK] metagenome; unknown
1692
1602
-
Ser
TGA
[ENA]
¢þ
>WENV170592924
FUFK010827947
[FUFK] metagenome; unknown
1126
1036
-
Ser
TGA
[ENA]
¢þ
>WENV170593732
FUFK010989169
[FUFK] metagenome; unknown
248
158
-
Ser
TGA
[ENA]
¢þ
>C181056069
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
969966
969876
-
Ser
TGA
-
¡û
>W09103313
AAJC01000006
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
33225
33315
+
Ser
TGA
[ENA]
¡û
>W1910377580
FUKN01000001
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
447401
447491
+
Ser
TGA
[ENA]
¡û
>W1910891655
NEXR01000009
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
17873
17783
-
Ser
TGA
[ENA]
¡û
>W1910891758
NEXU01000001
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
11163
11253
+
Ser
TGA
[ENA]
¡û
>W1810155479
PJAS01000075
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
87200
87290
+
Ser
TGA
[ENA]
¡û
>W1810155498
PJAT01000084
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
16101
16191
+
Ser
TGA
[ENA]
¡û
>W1810156199
PJBD01000094
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
957
867
-
Ser
TGA
[ENA]
¡û
>W1810156329
PJBF01000054
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
58499
58589
+
Ser
TGA
[ENA]
¡û
>W1810156444
PJBH01000069
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
58533
58623
+
Ser
TGA
[ENA]
¡û
>W1810157257
PJBU01000096
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
28948
29038
+
Ser
TGA
[ENA]
¡û
>W1810157372
PJBX01000142
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
12773
12863
+
Ser
TGA
[ENA]
¡û
>W1810157429
PJBY01000098
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
16321
16411
+
Ser
TGA
[ENA]
¡û
>W1810692656
QLKS01000001
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
834118
834028
-
Ser
TGA
[ENA]
¡û
>C151097234
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
2288563
2288653
+
Ser
TGA
-
¡û
>C161042756
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
2361245
2361155
-
Ser
TGA
-
¡û
>C161042804
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
2429994
2429904
-
Ser
TGA
[Ensembl]
¡û
>C161079283
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
2521896
2521806
-
Ser
TGA
[Ensembl]
¡û
>C131017402
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
2308000
2307910
-
Ser
TGA
[Ensembl]
¡û
>W1610642122
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
36143
36053
-
Ser
TGA
[ENA]
¡û
>W1610752318
LNDJ01000024
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
42535
42445
-
Ser
TGA
[ENA]
¡û
>W1610774074
LNUO01000001
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
18679
18769
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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