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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219697 (36 seq.)
>W1710796615
LJSG01000012
Alphaproteobacteria
Roseibaca calidilacus HL-91 [LJSG]
148869
148786
-
Pseudo
GTA
[ENA]
¡û
>C172000100
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
2531393
2531476
+
Tyr
GTA
-
¡û
>C172000169
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
2005301
2005384
+
Tyr
GTA
-
¡û
>WENV181233670
OFET01000035
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
109441
109524
+
Tyr
GTA
[ENA]
¢þ
>WENV181234355
OFEU01000057
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
148825
148742
-
Tyr
GTA
[ENA]
¢þ
>WENV170550994
CXWF01062926
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
14153
14070
-
Tyr
GTA
[ENA]
¢þ
>C181169776
CP028918
Alphaproteobacteria
Gemmobacter aquarius HYN0069 [CP028918]
2569483
2569566
+
Tyr
GTA
-
¡û
>C181194153
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
125469
125552
+
Tyr
GTA
-
¡û
>W142000114
APGJ01000007
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [APGJ]
509791
509708
-
Tyr
GTA
[ENA]
¡û
>W142000727
JAFT01000005
Alphaproteobacteria
Oceanicola sp. HL-35 [JAFT]
2602761
2602678
-
Tyr
GTA
[ENA]
¡û
>W1910443273
FWFY01000001
Alphaproteobacteria
Limimaricola soesokkakensis CECT 8367 [FWFY]
118391
118308
-
Tyr
GTA
[ENA]
¡û
>W1911189698
NQWH01000004
Alphaproteobacteria
Limimaricola cinnabarinus XM1 [NQWH]
143301
143384
+
Tyr
GTA
[ENA]
¡û
>W1810365086
PVTT01000001
Alphaproteobacteria
Hasllibacter halocynthiae DSM 29318 [PVTT]
395023
394940
-
Tyr
GTA
[ENA]
¡û
>W1810400381
PYGB01000003
Alphaproteobacteria
Limimaricola soesokkakensis DSM 29956 [PYGB]
305590
305673
+
Tyr
GTA
[ENA]
¡û
>W1810503555
QBKF01000007
Alphaproteobacteria
Pararhodobacter aggregans DSM 18938 [QBKF]
107582
107499
-
Tyr
GTA
[ENA]
¡û
>W1810504540
QBKZ01000028
Alphaproteobacteria
Mangrovicoccus ximenensis T1lg56 [QBKZ]
23056
23139
+
Tyr
GTA
[ENA]
¡û
>W1810535437
QDDR01000007
Alphaproteobacteria
Pararhodobacter aggregans D1-19 [QDDR]
107731
107648
-
Tyr
GTA
[ENA]
¡û
>W1810672107
QJTE01000004
Alphaproteobacteria
Pseudoroseicyclus aestuarii CECT 9025 [QJTE]
124079
124162
+
Tyr
GTA
[ENA]
¡û
>W1810722636
QNVJ01000041
Alphaproteobacteria
Alkalilacustris brevis 34079 [QNVJ]
13009
12926
-
Tyr
GTA
[ENA]
¡û
>C11200018
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
1987910
1987993
+
Tyr
GTA
[Ensembl]
¡û
>C11200019
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
2273665
2273748
+
Tyr
GTA
[Ensembl]
¡û
>C162000047
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
2378411
2378494
+
Tyr
GTA
-
¡û
>C162000122
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
2377327
2377410
+
Tyr
GTA
-
¡û
>W1610190055
FBYC01000001
Alphaproteobacteria
Roseibaca calidilacus HL-91 [FBYC]
395047
394964
-
Pseudo
GTA
[ENA]
¡û
>W1610660572
LJSG01000012
Alphaproteobacteria
Roseibaca calidilacus HL-91 [LJSG]
148869
148786
-
Pseudo
GTA
[ENA]
¡û
>W1620000070
AONG01000010
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
17605
17688
+
Tyr
GTA
[ENA]
¡û
>W1620001682
LUOO01000008
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
4957
4874
-
Tyr
GTA
[ENA]
¡û
>W1620001683
LUOP01000011
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
954599
954682
+
Tyr
GTA
[ENA]
¡û
>W1720000036
AONG01000010
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
17605
17688
+
Tyr
GTA
[ENA]
¡û
>W1720000942
FNAT01000002
Alphaproteobacteria
Limimaricola pyoseonensis [FNAT]
443083
443000
-
Tyr
GTA
[ENA]
¡û
>W1720002154
LUOO01000008
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
4957
4874
-
Tyr
GTA
[ENA]
¡û
>W1720002155
LUOP01000011
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
954599
954682
+
Tyr
GTA
[ENA]
¡û
>W1710191671
FBYC01000001
Alphaproteobacteria
Roseibaca calidilacus HL-91 [FBYC]
395047
394964
-
Pseudo
GTA
[ENA]
¡û
>W132000138
AQOX01000001
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [AQOX]
149112
149029
-
Tyr
GTA
[ENA]
¡û
>W132000155
ARAY01000009
Alphaproteobacteria
Wenxinia marina DSM 24838 [ARAY]
17604
17687
+
Tyr
GTA
[ENA]
¡û
>W132000258
ATUJ01000001
Alphaproteobacteria
Paracoccus zeaxanthinifaciens ATCC 21588 [ATUJ]
20022
20105
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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