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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219805 (7 seq.)
>W1711412034
MGTU01000009
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
130316
130392
+
Asp
GTC
[ENA]
¡û
>W1711412395
MGUE01000011
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
28522
28598
+
Asp
GTC
[ENA]
¡û
>WENV183668356
ORJL010733212
[ORJL] groundwater metagenome; groundwater
182
106
-
Asp
GTC
[ENA]
¡û
>WENV170623415
FUWD013150528
[FUWD] metagenome; unknown
629
705
+
Asp
GTC
[ENA]
¡û
>WENV170631684
FUWD013361588
[FUWD] metagenome; unknown
629
705
+
Asp
GTC
[ENA]
¡û
>W1910727647
MGUP01000514
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
2534
2458
-
Asp
GTC
[ENA]
¡û
>W2010861075
MGUP01000514
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
2534
2458
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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