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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.220273 (127 seq.)
>W1710878902
LMRI01000002
Actinomycetota
Rhodococcus sp. Leaf7 [LMRI]
1167969
1168045
+
Ile
GAT
[ENA]
¡û
>W1710879277
LMRO01000004
Actinomycetota
Rhodococcus sp. Leaf233 [LMRO]
37744
37818
+
Ile
GAT
[ENA]
¡û
>W1710879336
LMRP01000002
Actinomycetota
Rhodococcus sp. Leaf247 [LMRP]
1168031
1168107
+
Ile
GAT
[ENA]
¡û
>W1710879431
LMRR01000023
Actinomycetota
Rhodococcus sp. Leaf278 [LMRR]
211288
211362
+
Ile
GAT
[ENA]
¡û
>W1711138021
LVCF01000037
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
6231
6157
-
Ile
GAT
[ENA]
¡û
>W1711138471
LVCV01000472
Actinomycetota
Rhodococcus sp. EPR-157 [LVCV]
3374
3448
+
Ile
GAT
[ENA]
¡û
>W1711138494
LVCW01000147
Actinomycetota
Rhodococcus sp. EPR-279 [LVCW]
1950
1876
-
Ile
GAT
[ENA]
¡û
>W1711143494
LVHI01000032
Actinomycetota
Rhodococcus kyotonensis [LVHI]
64223
64297
+
Ile
GAT
[ENA]
¡û
>W1711492119
MKKD01000019
Actinomycetota
Rhodococcus sp. CUA-806 [MKKD]
155686
155612
-
Ile
GAT
[ENA]
¡û
>W1711492851
MKKX01000035
Actinomycetota
Rhodococcus sp. 1163 [MKKX]
170120
170044
-
Ile
GAT
[ENA]
¡û
>W1711492888
MKKY01000068
Actinomycetota
Rhodococcus sp. 1168 fascians [MKKY]
58546
58622
+
Ile
GAT
[ENA]
¡û
>W131180495
ARND01000052
Actinomycetota
Rhodococcus sp. 29MFTsu3.1 [ARND]
73315
73241
-
Ile
GAT
[ENA]
¡û
>W131185167
ARTN01000026
Actinomycetota
Rhodococcus sp. 114MFTsu3.1 [ARTN]
102703
102777
+
Ile
GAT
[ENA]
¡û
>W131244313
CAPS01000023
Actinomycetota
Rhodococcus sp. AW25M09 [CAPS]
1138
1212
+
Ile
GAT
[ENA]
¡û
>w003997
AAEF02000034
Actinomycetota
Kineococcus radiotolerans SRS30216 [AAEF]
12949
12876
-
Ile
GAT
[ENA]
¡û
>WENV181123238
OEFO01191081
[OEFO] soil metagenome; soil
81
6
-
Ile
GAT
[ENA]
¢þ
>W141168778
AXVF01000001
Actinomycetota
Rhodococcus sp. JG-3 [AXVF]
825728
825654
-
Ile
GAT
[ENA]
¡û
>C08005723
CP000750
Actinomycetota
Kineococcus radiotolerans SRS30216 = ATCC BAA-149 [CP000750]
2307866
2307790
-
Ile
GAT
[Ensembl]
¡û
>C191094569
CP032762
Actinomycetota
Rhodococcus sp. P1Y [CP032762]
747219
747145
-
Ile
GAT
-
¡û
>C191163967
CP039254
Actinomycetota
Rhodococcus sp. PAMC28705 [CP039254]
803898
803972
+
Ile
GAT
-
¡û
>W141702693
JMLQ01000005
Actinomycetota
Rhodococcus sp. UNC23MFCrub1.1 [JMLQ]
55482
55406
-
Ile
GAT
[ENA]
¡û
>W141750822
JNSE01000033
Actinomycetota
actinobacterium acAMD-2 [JNSE]
25820
25744
-
Ile
GAT
[ENA]
¡û
>W141771131
JOGY01001119
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
3677
3601
-
Ile
GAT
[ENA]
¡û
>W1910548923
FZOW01000010
Actinomycetota
Rhodococcus kyotonensis JCM 23211 [FZOW]
35976
35902
-
Ile
GAT
[ENA]
¡û
>W1911137635
NOWH01000018
Actinomycetota
Rhodococcus fascians PBTS 2 [NOWH]
217242
217168
-
Ile
GAT
[ENA]
¡û
>W1911139516
NOXZ01000021
Actinomycetota
Rhodococcus sp. RS1C4 [NOXZ]
111564
111638
+
Ile
GAT
[ENA]
¡û
>W1911139623
NOYB01000016
Actinomycetota
Rhodococcus sp. 06-470-2 [NOYB]
121315
121241
-
Ile
GAT
[ENA]
¡û
>W1911139670
NOYC01000012
Actinomycetota
Rhodococcus sp. 06-469-3-2 [NOYC]
243620
243546
-
Ile
GAT
[ENA]
¡û
>W1911139698
NOYD01000001
Actinomycetota
Rhodococcus sp. 06-462-5 [NOYD]
157077
157003
-
Ile
GAT
[ENA]
¡û
>W1911139840
NOYF01000048
Actinomycetota
Rhodococcus sp. 06-418-1B [NOYF]
148702
148628
-
Ile
GAT
[ENA]
¡û
>W1911139865
NOYG01000019
Actinomycetota
Rhodococcus sp. 06-412-2C [NOYG]
385322
385248
-
Ile
GAT
[ENA]
¡û
>W1911139897
NOYH01000004
Actinomycetota
Rhodococcus sp. 06-412-2B [NOYH]
304990
304916
-
Ile
GAT
[ENA]
¡û
>W1911139948
NOYI01000009
Actinomycetota
Rhodococcus sp. 06-235-1A [NOYI]
198935
198861
-
Ile
GAT
[ENA]
¡û
>W1911139989
NOYJ01000006
Actinomycetota
Rhodococcus sp. 06-221-2 [NOYJ]
111424
111350
-
Ile
GAT
[ENA]
¡û
>W1911140035
NOYK01000008
Actinomycetota
Rhodococcus sp. 06-156-4C [NOYK]
157936
157862
-
Ile
GAT
[ENA]
¡û
>W1911140103
NOYL01000026
Actinomycetota
Rhodococcus sp. 06-156-4a [NOYL]
138012
138086
+
Ile
GAT
[ENA]
¡û
>W1911140178
NOYM01000043
Actinomycetota
Rhodococcus sp. 06-156-3C [NOYM]
137834
137908
+
Ile
GAT
[ENA]
¡û
>W1911140362
NOYP01000091
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
74402
74476
+
Ile
GAT
[ENA]
¡û
>W1911140387
NOYQ01000014
Actinomycetota
Rhodococcus sp. 06-1477-1A [NOYQ]
1016982
1017056
+
Ile
GAT
[ENA]
¡û
>W1911140422
NOYR01000006
Actinomycetota
Rhodococcus sp. 06-1474-1B [NOYR]
74391
74465
+
Ile
GAT
[ENA]
¡û
>W1911140505
NOYS01000037
Actinomycetota
Rhodococcus sp. 06-1460-1B [NOYS]
73438
73512
+
Ile
GAT
[ENA]
¡û
>W1911140548
NOYT01000055
Actinomycetota
Rhodococcus sp. 06-1059B-a [NOYT]
2875
2801
-
Ile
GAT
[ENA]
¡û
>W1911140570
NOYU01000005
Actinomycetota
Rhodococcus sp. 05-340-2 [NOYU]
78597
78523
-
Ile
GAT
[ENA]
¡û
>W1911140643
NOYV01000028
Actinomycetota
Rhodococcus sp. 05-340-1 [NOYV]
169128
169054
-
Ile
GAT
[ENA]
¡û
>W1911140677
NOYW01000016
Actinomycetota
Rhodococcus sp. 05-339-2 [NOYW]
481631
481557
-
Ile
GAT
[ENA]
¡û
>W1911140719
NOYX01000018
Actinomycetota
Rhodococcus sp. 05-2256-B4 [NOYX]
34290
34216
-
Ile
GAT
[ENA]
¡û
>W1911140753
NOYY01000008
Actinomycetota
Rhodococcus sp. 05-2256-B3 [NOYY]
72944
73018
+
Ile
GAT
[ENA]
¡û
>W1911140838
NOYZ01000033
Actinomycetota
Rhodococcus sp. 05-2256-B2 [NOYZ]
127967
127893
-
Ile
GAT
[ENA]
¡û
>W1911140884
NOZA01000041
Actinomycetota
Rhodococcus sp. 05-2256-B1 [NOZA]
72954
73028
+
Ile
GAT
[ENA]
¡û
>W1911140903
NOZB01000019
Actinomycetota
Rhodococcus sp. 05-2255-3C [NOZB]
284572
284646
+
Ile
GAT
[ENA]
¡û
>W1911140947
NOZC01000007
Actinomycetota
Rhodococcus sp. 05-2255-3B1 [NOZC]
303372
303446
+
Ile
GAT
[ENA]
¡û
>W1911140999
NOZD01000030
Actinomycetota
Rhodococcus sp. 05-2255-2A2 [NOZD]
186519
186445
-
Ile
GAT
[ENA]
¡û
>W1911141069
NOZE01000028
Actinomycetota
Rhodococcus sp. 05-2255-1e [NOZE]
163328
163254
-
Ile
GAT
[ENA]
¡û
>W1911141107
NOZF01000173
Actinomycetota
Rhodococcus sp. 05-2254-6 [NOZF]
3336
3410
+
Ile
GAT
[ENA]
¡û
>W1911141141
NOZG01000008
Actinomycetota
Rhodococcus sp. 05-2254-5 [NOZG]
49016
48942
-
Ile
GAT
[ENA]
¡û
>W1911141169
NOZH01000004
Actinomycetota
Rhodococcus sp. 05-2254-4 [NOZH]
192536
192610
+
Ile
GAT
[ENA]
¡û
>W1911141220
NOZI01000004
Actinomycetota
Rhodococcus sp. 05-2254-3 [NOZI]
597223
597149
-
Ile
GAT
[ENA]
¡û
>W1911141274
NOZJ01000008
Actinomycetota
Rhodococcus sp. 05-2254-2 [NOZJ]
597223
597149
-
Ile
GAT
[ENA]
¡û
>W1911141344
NOZK01000028
Actinomycetota
Rhodococcus sp. 05-2254-1 [NOZK]
78395
78469
+
Ile
GAT
[ENA]
¡û
>W1911141359
NOZL01000012
Actinomycetota
Rhodococcus sp. 05-2221-1B [NOZL]
121315
121241
-
Ile
GAT
[ENA]
¡û
>W1911141440
NOZM01000030
Actinomycetota
Rhodococcus sp. 02-925g [NOZM]
157077
157003
-
Ile
GAT
[ENA]
¡û
>W1911141459
NOZN01000014
Actinomycetota
Rhodococcus fascians B3 [NOZN]
72884
72958
+
Ile
GAT
[ENA]
¡û
>W1911141505
NOZO01000011
Actinomycetota
Rhodococcus fascians A2 [NOZO]
72884
72958
+
Ile
GAT
[ENA]
¡û
>W1911149052
NPFM01000016
Actinomycetota
Rhodococcus sp. 15-649-2-2 [NPFM]
167370
167444
+
Ile
GAT
[ENA]
¡û
>W1911149147
NPFO01000009
Actinomycetota
Rhodococcus fascians 15-508-1b [NPFO]
72884
72958
+
Ile
GAT
[ENA]
¡û
>W1911149288
NPFR01000010
Actinomycetota
Rhodococcus sp. 15-1154-1 [NPFR]
427409
427483
+
Ile
GAT
[ENA]
¡û
>W1911149339
NPFS01000010
Actinomycetota
Rhodococcus sp. 14-2686-1-2 [NPFS]
645913
645987
+
Ile
GAT
[ENA]
¡û
>W1911149386
NPFT01000010
Actinomycetota
Rhodococcus fascians 14-2632-D2 [NPFT]
72894
72968
+
Ile
GAT
[ENA]
¡û
>W1911149433
NPFU01000009
Actinomycetota
Rhodococcus fascians 14-2632c-1 [NPFU]
72895
72969
+
Ile
GAT
[ENA]
¡û
>W1911149478
NPFV01000012
Actinomycetota
Rhodococcus sp. 14-2496-1d [NPFV]
301570
301644
+
Ile
GAT
[ENA]
¡û
>W1911149633
NPFY01000012
Actinomycetota
Rhodococcus sp. 14-2470-1b [NPFY]
113795
113869
+
Ile
GAT
[ENA]
¡û
>W1911149684
NPFZ01000026
Actinomycetota
Rhodococcus sp. 14-2470-1a [NPFZ]
64956
65030
+
Ile
GAT
[ENA]
¡û
>W1911149729
NPGA01000012
Actinomycetota
Rhodococcus sp. 14-1411-2a [NPGA]
79380
79454
+
Ile
GAT
[ENA]
¡û
>W1911492017
OBDL01000004
Actinomycetota
Rhodococcus sp. OK270 [OBDL]
78556
78482
-
Ile
GAT
[ENA]
¡û
>W1810477648
QAOZ01000003
Actinomycetota
Rhodococcus sp. OK611 [QAOZ]
78556
78482
-
Ile
GAT
[ENA]
¡û
>W1810594922
QGDN01000001
Actinomycetota
Branchiibius hedensis DSM 22951 [QGDN]
3256505
3256579
+
Ile
GAT
[ENA]
¡û
>W1810605729
QGNK01000005
Actinomycetota
Rhodococcus sp. Eu-32 [QGNK]
247588
247662
+
Ile
GAT
[ENA]
¡û
>W1810861450
QTTW01000009
Actinomycetota
Rhodococcus sp. OK269 [QTTW]
138656
138730
+
Ile
GAT
[ENA]
¡û
>SRA1016464
SRR023846.511820
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
93
17
-
Ile
GAT
[SRA]
>C11111410
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
16630
16706
+
Ile
GAT
[Ensembl]
¡û
>W1511186039
JMEN01000025
Actinomycetota
Rhodococcus fascians NBRC 12155 = LMG 3623 [JMEN]
72949
73023
+
Ile
GAT
[ENA]
¡û
>W1511186081
JMEO01000029
Actinomycetota
Rhodococcus fascians LMG 3616 [JMEO]
641750
641824
+
Ile
GAT
[ENA]
¡û
>W1511186133
JMEP01000019
Actinomycetota
Rhodococcus fascians LMG 3605 [JMEP]
224492
224418
-
Ile
GAT
[ENA]
¡û
>W1511186185
JMEQ01000023
Actinomycetota
Rhodococcus fascians LMG 3602 [JMEQ]
511401
511475
+
Ile
GAT
[ENA]
¡û
>W1511186210
JMER01000009
Actinomycetota
Rhodococcus fascians GIC36 [JMER]
69383
69309
-
Ile
GAT
[ENA]
¡û
>W1511186270
JMES01000038
Actinomycetota
Rhodococcus fascians GIC26 [JMES]
43091
43165
+
Ile
GAT
[ENA]
¡û
>W1511186299
JMET01000010
Actinomycetota
Rhodococcus fascians D188 [JMET]
73167
73241
+
Ile
GAT
[ENA]
¡û
>W1511186368
JMEU01000036
Actinomycetota
Rhodococcus fascians A78 [JMEU]
494617
494691
+
Ile
GAT
[ENA]
¡û
>W1511186420
JMEV01000028
Actinomycetota
Rhodococcus fascians A76 [JMEV]
445860
445934
+
Ile
GAT
[ENA]
¡û
>W1511186431
JMEW01000010
Actinomycetota
Rhodococcus fascians A73a [JMEW]
216299
216225
-
Ile
GAT
[ENA]
¡û
>W1511186507
JMEX01000008
Actinomycetota
Rhodococcus fascians A44A A44a [JMEX]
1371232
1371158
-
Ile
GAT
[ENA]
¡û
>W1511186553
JMEY01000033
Actinomycetota
Rhodococcus fascians A3b [JMEY]
179279
179205
-
Ile
GAT
[ENA]
¡û
>W1511186583
JMEZ01000014
Actinomycetota
Rhodococcus fascians A25f [JMEZ]
399928
399854
-
Ile
GAT
[ENA]
¡û
>W1511186630
JMFA01000018
Actinomycetota
Rhodococcus fascians A21d2 [JMFA]
374764
374838
+
Ile
GAT
[ENA]
¡û
>W1511186674
JMFB01000011
Actinomycetota
Rhodococcus fascians 05-561-1 [JMFB]
298009
298083
+
Ile
GAT
[ENA]
¡û
>W1511186739
JMFC01000019
Actinomycetota
Rhodococcus fascians 05-339-1 [JMFC]
631845
631919
+
Ile
GAT
[ENA]
¡û
>W1511186757
JMFD01000002
Actinomycetota
Rhodococcus fascians 04-516 [JMFD]
240247
240173
-
Ile
GAT
[ENA]
¡û
>W1511186814
JMFE01000014
Actinomycetota
Rhodococcus fascians 02-816c [JMFE]
274779
274705
-
Ile
GAT
[ENA]
¡û
>W1511186859
JMFF01000021
Actinomycetota
Rhodococcus fascians 02-815 [JMFF]
741122
741048
-
Ile
GAT
[ENA]
¡û
>W1511270524
JOKB01000028
Actinomycetota
Rhodococcus fascians A22b [JOKB]
348717
348791
+
Ile
GAT
[ENA]
¡û
>W1511509014
JXQS01000009
Actinomycetota
Rhodococcus sp. MEB064 [JXQS]
83645
83721
+
Ile
GAT
[ENA]
¡û
>W1511543360
JZIS01000020
Actinomycetota
Rhodococcus sp. PML026 [JZIS]
460072
459998
-
Ile
GAT
[ENA]
¡û
>W1511678818
LFDS01000005
Actinomycetota
Rhodococcus fascians F7 [LFDS]
249384
249458
+
Ile
GAT
[ENA]
¡û
>C161084586
CP015219
Actinomycetota
Rhodococcus sp. PBTS 1 [CP015219]
3999692
3999616
-
Ile
GAT
[Ensembl]
¡û
>C161084647
CP015220
Actinomycetota
Rhodococcus fascians PBTS 2 [CP015220]
1557044
1556970
-
Ile
GAT
[Ensembl]
¡û
>W1610041399
BAOX01000537
Actinomycetota
Rhodococcus sp. BS-15 [BAOX]
412
338
-
Ile
GAT
[ENA]
¡û
>W1610081236
BDDI01000006
Actinomycetota
Hoyosella altamirensis [BDDI]
121419
121345
-
Ile
GAT
[ENA]
¡û
>W1610741248
LMRI01000002
Actinomycetota
Rhodococcus sp. Leaf7 [LMRI]
1167969
1168045
+
Ile
GAT
[ENA]
¡û
>W1610741623
LMRO01000004
Actinomycetota
Rhodococcus sp. Leaf233 [LMRO]
37744
37818
+
Ile
GAT
[ENA]
¡û
>W1610741682
LMRP01000002
Actinomycetota
Rhodococcus sp. Leaf247 [LMRP]
1168031
1168107
+
Ile
GAT
[ENA]
¡û
>W1610741777
LMRR01000023
Actinomycetota
Rhodococcus sp. Leaf278 [LMRR]
211288
211362
+
Ile
GAT
[ENA]
¡û
>W1610949107
LVCF01000037
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
6231
6157
-
Ile
GAT
[ENA]
¡û
>W1610949511
LVCV01000472
Actinomycetota
Rhodococcus sp. EPR-157 [LVCV]
3374
3448
+
Ile
GAT
[ENA]
¡û
>W1610949534
LVCW01000147
Actinomycetota
Rhodococcus sp. EPR-279 [LVCW]
1950
1876
-
Ile
GAT
[ENA]
¡û
>W1610954502
LVHI01000032
Actinomycetota
Rhodococcus kyotonensis [LVHI]
64223
64297
+
Ile
GAT
[ENA]
¡û
>W1710038562
BAOX01000537
Actinomycetota
Rhodococcus sp. BS-15 [BAOX]
412
338
-
Ile
GAT
[ENA]
¡û
>W1710071765
BCWV01000009
Actinomycetota
Rhodococcus corynebacterioides NBRC 14404 [BCWV]
74793
74869
+
Ile
GAT
[ENA]
¡û
>W1710071768
BCWW01000001
Actinomycetota
Rhodococcus fascians NBRC 12155 = LMG 3623 [BCWW]
248301
248375
+
Ile
GAT
[ENA]
¡û
>W1710071994
BCXA01000033
Actinomycetota
Rhodococcus maanshanensis NBRC 100610 [BCXA]
86679
86605
-
Ile
GAT
[ENA]
¡û
>W1710072316
BCXG01000040
Actinomycetota
Rhodococcus tukisamuensis NBRC 100609 [BCXG]
26970
26896
-
Ile
GAT
[ENA]
¡û
>W1710072347
BCXH01000013
Actinomycetota
Rhodococcus yunnanensis NBRC 103083 [BCXH]
169246
169172
-
Ile
GAT
[ENA]
¡û
>W1710079887
BDDI01000006
Actinomycetota
Hoyosella altamirensis [BDDI]
121419
121345
-
Ile
GAT
[ENA]
¡û
>W1710513366
FNAB01000025
Actinomycetota
Rhodococcus tukisamuensis [FNAB]
27083
27009
-
Ile
GAT
[ENA]
¡û
>W1710534302
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
1471951
1471877
-
Ile
GAT
[ENA]
¡û
>W1710544542
FOAW01000039
Actinomycetota
Rhodococcus maanshanensis [FOAW]
23817
23891
+
Ile
GAT
[ENA]
¡û
>W1710555506
FOJN01000006
Actinomycetota
Rhodococcus kroppenstedtii [FOJN]
75649
75573
-
Ile
GAT
[ENA]
¡û
>W1710561239
FONZ01000005
Actinomycetota
Flavimobilis marinus [FONZ]
37174
37100
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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