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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.220913 (8 seq.)
>WENV183058264
OLHP01000082
[OLHP] seawater metagenome; Sea water
6729
6812
+
Tyr
GTA
[ENA]
¢þ
>WENV183058401
OLHQ01009498
[OLHQ] seawater metagenome; Sea water
103
186
+
Tyr
GTA
[ENA]
¢þ
>WENV170014540
AYRH01001986
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
497
580
+
Tyr
GTA
[ENA]
¢þ
>W141557230
JHUZ01000008
Gammaproteobacteria
Balneatrix alpica DSM 16621 [JHUZ]
509485
509568
+
Tyr
GTA
[ENA]
¡û
>W141557231
JHUZ01000008
Gammaproteobacteria
Balneatrix alpica DSM 16621 [JHUZ]
509626
509709
+
Tyr
GTA
[ENA]
¡û
>W141557256
JHUZ01000011
Gammaproteobacteria
Balneatrix alpica DSM 16621 [JHUZ]
523148
523065
-
Tyr
GTA
[ENA]
¡û
>W1710551436
FOGB01000011
Gammaproteobacteria
Amphritea atlantica [FOGB]
131021
131104
+
Tyr
GTA
[ENA]
¡û
>W1710551443
FOGB01000013
Gammaproteobacteria
Amphritea atlantica [FOGB]
71291
71374
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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