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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.221027 (44 seq.)
>w014068
AAOE01000002
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
249110
249188
+
Met
CAT
[ENA]
¡û
>C171092423
CP019343
Gammaproteobacteria
Oceanicoccus sagamiensis NBRC 107125 [CP019343]
2333395
2333319
-
Met
CAT
-
¡û
>C171092428
CP019343
Gammaproteobacteria
Oceanicoccus sagamiensis NBRC 107125 [CP019343]
459613
459537
-
Met
CAT
-
¡û
>WENV180310274
OBJS01397977
[OBJS] beach sand metagenome; beach sand
88
12
-
fMet
CAT
[ENA]
¢þ
>WENV180648229
OCSI01132440
[OCSI] metagenome; diffuse fluid
195
119
-
fMet
CAT
[ENA]
¢þ
>WENV181305491
OFIG01015288
[OFIG] marine metagenome; seawater
160
236
+
fMet
CAT
[ENA]
¢þ
>WENV181400541
OFSF01010024
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1388
1314
-
fMet
CAT
[ENA]
¢þ
>W141152720
AXCA01000068
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
33554
33478
-
Met
CAT
[ENA]
¡û
>WENV182575516
OJFV01000020
[OJFV] seawater metagenome; Sea water
27020
27096
+
fMet
CAT
[ENA]
¢þ
>WENV183705493
PDWI01001664
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
34315
34391
+
fMet
CAT
[ENA]
¢þ
>WENV183707658
PDWI01009714
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9166
9242
+
fMet
CAT
[ENA]
¢þ
>WENV183717558
PDWJ01001119
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
43515
43591
+
fMet
CAT
[ENA]
¢þ
>WENV183718698
PDWJ01005935
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
15052
14976
-
fMet
CAT
[ENA]
¢þ
>WENV170014381
AYRF01010193
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
412
336
-
Met
CAT
[ENA]
¢þ
>WENV170704591
LLEL01003711
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
567
643
+
Met
CAT
[ENA]
¢þ
>WENV170704616
LLEL01009792
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
152
76
-
Met
CAT
[ENA]
¢þ
>W141557730
JHVJ01000014
Gammaproteobacteria
Marinobacterium jannaschii DSM 6295 [JHVJ]
22107
22183
+
Met
CAT
[ENA]
¡û
>W141775924
JOKG01000001
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
926298
926222
-
Met
CAT
[ENA]
¡û
>W141775925
JOKG01000001
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
926118
926042
-
Met
CAT
[ENA]
¡û
>W141775926
JOKG01000001
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
925938
925862
-
Met
CAT
[ENA]
¡û
>W141775927
JOKG01000001
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
925806
925730
-
Met
CAT
[ENA]
¡û
>W141775977
JOKG01000004
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
772909
772833
-
Met
CAT
[ENA]
¡û
>W141776040
JOKH01000004
Gammaproteobacteria
Endozoicomonas numazuensis [JOKH]
381804
381880
+
Met
CAT
[ENA]
¡û
>W1910270369
FQLF01000002
Gammaproteobacteria
Oceanicoccus sp. KOV_DT_Chl [FQLF]
600467
600391
-
Met
CAT
[ENA]
¡û
>W1910270384
FQLF01000005
Gammaproteobacteria
Oceanicoccus sp. KOV_DT_Chl [FQLF]
691894
691970
+
Met
CAT
[ENA]
¡û
>W1911717888
QQTF01000004
Gammaproteobacteria
Kangiella sp. HD9-110m-PIT-SAG06 [QQTF]
173814
173738
-
Met
CAT
[ENA]
¡û
>W1911717909
QQTG01000011
Gammaproteobacteria
Kangiella sp. HD9-110m-PIT-SAG07 [QQTG]
3319
3243
-
Met
CAT
[ENA]
¡û
>W1911748766
QWEZ01000001
Gammaproteobacteria
Aestuariirhabdus litorea GTF13 [QWEZ]
520078
520002
-
Met
CAT
[ENA]
¡û
>W1911748780
QWEZ01000002
Gammaproteobacteria
Aestuariirhabdus litorea GTF13 [QWEZ]
1298928
1299004
+
Met
CAT
[ENA]
¡û
>W1810628277
QICH01000001
Gammaproteobacteria
Kangiella spongicola ATCC BAA-2076 [QICH]
1119575
1119651
+
Met
CAT
[ENA]
¡û
>C151017327
CP007142
Gammaproteobacteria
Gynuella sunshinyii YC6258 [CP007142]
4930224
4930300
+
Met
CAT
[Ensembl]
¡û
>C151074719
CP010975
Gammaproteobacteria
Kangiella geojedonensis YCS-5 [CP010975]
2267506
2267430
-
Met
CAT
[Ensembl]
¡û
>C161054032
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
4716665
4716589
-
Met
CAT
[Ensembl]
¡û
>C161054089
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
2109459
2109383
-
Met
CAT
[Ensembl]
¡û
>C161054092
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
2108916
2108840
-
Met
CAT
[Ensembl]
¡û
>C161054093
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
2108736
2108660
-
Met
CAT
[Ensembl]
¡û
>C161054094
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
2108556
2108480
-
Met
CAT
[Ensembl]
¡û
>W1610576419
LASA01000057
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
6629
6705
+
Met
CAT
[ENA]
¡û
>W1610576586
LASB01001183
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
1127
1051
-
Met
CAT
[ENA]
¡û
>W1710551408
FOGB01000005
Gammaproteobacteria
Amphritea atlantica [FOGB]
246137
246061
-
Met
CAT
[ENA]
¡û
>W1710551425
FOGB01000009
Gammaproteobacteria
Amphritea atlantica [FOGB]
99571
99495
-
Met
CAT
[ENA]
¡û
>W1710551446
FOGB01000017
Gammaproteobacteria
Amphritea atlantica [FOGB]
14990
15066
+
Met
CAT
[ENA]
¡û
>W1710694908
LASA01000057
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
6629
6705
+
Met
CAT
[ENA]
¡û
>W1710695075
LASB01001183
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
1127
1051
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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