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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.221052 (68 seq.)
>W1711091048
LTBB01000029
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
837
761
-
Met
CAT
[ENA]
¡û
>W131044174
AMQH01000021
Bacillota
Clostridium tunisiense TJ [AMQH]
377
453
+
Met
CAT
[ENA]
¡û
>W131044192
AMQH01000033
Bacillota
Clostridium tunisiense TJ [AMQH]
3283
3207
-
Met
CAT
[ENA]
¡û
>W131065943
ANOE01000069
Bacillota
Clostridium tyrobutyricum UC7086 [ANOE]
29905
29829
-
Met
CAT
[ENA]
¡û
>W131065958
ANOE01000092
Bacillota
Clostridium tyrobutyricum UC7086 [ANOE]
53881
53957
+
Met
CAT
[ENA]
¡û
>W131082845
ANZB01000017
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
49443
49519
+
Met
CAT
[ENA]
¡û
>W131111682
APMH01000033
Bacillota
Clostridium tyrobutyricum DSM 2637 = ATCC 25755 [APMH]
510
434
-
Met
CAT
[ENA]
¡û
>W131224142
AUCO01000022
Bacillota
Clostridium tyrobutyricum DSM 2637 = ATCC 25755 [AUCO]
605
529
-
Met
CAT
[ENA]
¡û
>W131224146
AUCO01000028
Bacillota
Clostridium tyrobutyricum DSM 2637 = ATCC 25755 [AUCO]
3
79
+
Met
CAT
[ENA]
¡û
>w025887
ABAJ01000001
Bacillota
Clostridium kluyveri DSM 555 [ABAJ]
2157155
2157231
+
Met
CAT
[ENA]
¡û
>C171019426
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
14642
14718
+
Met
CAT
-
¡û
>C171019488
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
3978296
3978220
-
Met
CAT
-
¡û
>C171019505
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
14642
14718
+
Met
CAT
-
¡û
>C171019567
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
3977307
3977231
-
Met
CAT
-
¡û
>C171077641
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
14514
14590
+
Met
CAT
-
¡û
>C171077663
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
271059
271135
+
Met
CAT
-
¡û
>W141082943
AUPA01000080
Bacillota
Clostridium sp. BL8 [AUPA]
867
943
+
Met
CAT
[ENA]
¡û
>W141082971
AUPA01000122
Bacillota
Clostridium sp. BL8 [AUPA]
3079
3003
-
Met
CAT
[ENA]
¡û
>C08003362
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
177395
177471
+
Met
CAT
[Ensembl]
¡û
>WENV183246040
OLRE01047240
[OLRE] human gut metagenome; faeces
111
187
+
Ile2
CAT
[ENA]
¢þ
>C191012361
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
14122
14198
+
Met
CAT
-
¡û
>C191106387
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
14398
14474
+
Met
CAT
-
¡û
>C191106424
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
2611247
2611171
-
Met
CAT
-
¡û
>C191138070
CP035280
Bacillota
Clostridium sp. JN-9 [CP035280]
14226
14302
+
Met
CAT
-
¡û
>C191138127
CP035280
Bacillota
Clostridium sp. JN-9 [CP035280]
3080048
3079972
-
Met
CAT
-
¡û
>C191184234
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
14562
14638
+
Met
CAT
-
¡û
>C191184244
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
237605
237681
+
Met
CAT
-
¡û
>W141803759
JPGY01000005
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
5625
5701
+
Met
CAT
[ENA]
¡û
>W141803821
JPGY01000010
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
45717
45641
-
Met
CAT
[ENA]
¡û
>W141803830
JPGY01000011
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
1253
1329
+
Met
CAT
[ENA]
¡û
>W141820404
JQMW01000009
Bacillota
Clostridium sp. KNHs214 [JQMW]
815698
815622
-
Met
CAT
[ENA]
¡û
>W141820407
JQMW01000011
Bacillota
Clostridium sp. KNHs214 [JQMW]
1203771
1203847
+
Met
CAT
[ENA]
¡û
>W141820449
JQMW01000011
Bacillota
Clostridium sp. KNHs214 [JQMW]
864030
863954
-
Met
CAT
[ENA]
¡û
>W143005926
CBXI010000041
Bacillota
Clostridium tyrobutyricum DIVETGP [CBXI]
72
-2
-
Met
CAT
[ENA]
¡û
>W1910498582
FXWX01000028
Bacillota
Haloimpatiens massiliensis Mt13 [FXWX]
898676
898752
+
Met
CAT
[ENA]
¡û
>W1910501401
FYAM01000010
Bacillota
Clostridium sp. BSD9I1 [FYAM]
344
420
+
Met
CAT
[ENA]
¡û
>W1910501419
FYAM01000021
Bacillota
Clostridium sp. BSD9I1 [FYAM]
319
395
+
Met
CAT
[ENA]
¡û
>W1911491373
OAOD01000034
Bacillota
Clostridium peptidivorans [OAOD]
121
197
+
Met
CAT
[ENA]
¡û
>W1810367481
PVXO01000043
Bacillota
Clostridium liquoris DSM 100320 [PVXO]
348
424
+
Met
CAT
[ENA]
¡û
>W1810367522
PVXP01000002
Bacillota
Clostridium luticellarii DSM 29923 [PVXP]
477
553
+
Met
CAT
[ENA]
¡û
>W1810579467
QEQN01000048
Bacillota
Clostridium thermopalmarium DSM 5974 [QEQN]
5212
5136
-
Met
CAT
[ENA]
¡û
>C151047002
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
14642
14718
+
Met
CAT
[Ensembl]
¡û
>C151047064
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
3977336
3977260
-
Met
CAT
[Ensembl]
¡û
>C151047081
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
14642
14718
+
Met
CAT
[Ensembl]
¡û
>C151047143
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
3977544
3977468
-
Met
CAT
[Ensembl]
¡û
>W1510755104
CYSK01000004
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
851
775
-
Met
CAT
[ENA]
¡û
>W1511187023
JMFY01000032
Bacillota
Clostridium sp. HMP27 [JMFY]
24099
24023
-
Met
CAT
[ENA]
¡û
>W1511399495
JTES01000018
Bacillota
Clostridium tyrobutyricum FAM22553 [JTES]
949
873
-
Met
CAT
[ENA]
¡û
>W1511399505
JTES01000029
Bacillota
Clostridium tyrobutyricum FAM22553 [JTES]
131
207
+
Met
CAT
[ENA]
¡û
>C161067885
CP014170
Bacillota
Clostridium tyrobutyricum KCTC 5387 [CP014170]
14363
14439
+
Met
CAT
-
¡û
>C161067920
CP014170
Bacillota
Clostridium tyrobutyricum KCTC 5387 [CP014170]
2927140
2927064
-
Met
CAT
-
¡û
>C161095627
CP016280
Bacillota
Clostridium tyrobutyricum W428 [CP016280]
2975916
2975992
+
Met
CAT
-
¡û
>C161095648
CP016280
Bacillota
Clostridium tyrobutyricum W428 [CP016280]
2817059
2816983
-
Met
CAT
-
¡û
>W1610041513
BASR01000684
Bacillota
Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 [BASR]
558
634
+
Met
CAT
[ENA]
¡û
>W1610165156
FAXL01000020
Bacillota
Clostridium tyrobutyricum [FAXL]
101
177
+
Met
CAT
[ENA]
¡û
>W1610165191
FAXL01000035
Bacillota
Clostridium tyrobutyricum [FAXL]
753
677
-
Met
CAT
[ENA]
¡û
>C131002486
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
14847
14923
+
Met
CAT
[Ensembl]
¡û
>C131002541
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
4616545
4616469
-
Met
CAT
[Ensembl]
¡û
>W1610635840
LITT01000047
Bacillota
Clostridium ljungdahlii [LITT]
1513
1437
-
Met
CAT
[ENA]
¡û
>W1610925247
LTBB01000029
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
837
761
-
Met
CAT
[ENA]
¡û
>W1710166772
FAXL01000020
Bacillota
Clostridium tyrobutyricum [FAXL]
101
177
+
Met
CAT
[ENA]
¡û
>W1710166807
FAXL01000035
Bacillota
Clostridium tyrobutyricum [FAXL]
753
677
-
Met
CAT
[ENA]
¡û
>W1710561858
FOOL01000024
Bacillota
Clostridium homopropionicum [FOOL]
35237
35161
-
Met
CAT
[ENA]
¡û
>W1710588718
FQZO01000011
Bacillota
Clostridium amylolyticum [FQZO]
41540
41616
+
Met
CAT
[ENA]
¡û
>W1710588723
FQZO01000014
Bacillota
Clostridium amylolyticum [FQZO]
288
364
+
Met
CAT
[ENA]
¡û
>W1710602327
FUYD01000002
Bacillota
Clostridium sp. USBA 49 [FUYD]
321046
321122
+
Met
CAT
[ENA]
¡û
>W1710602365
FUYD01000015
Bacillota
Clostridium sp. USBA 49 [FUYD]
49786
49710
-
Met
CAT
[ENA]
¡û
>W1710770613
LITT01000047
Bacillota
Clostridium ljungdahlii [LITT]
1513
1437
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK