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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.221104 (6 seq.)
>WENV180668569
OCVV011264149
[OCVV] gut metagenome; gut
37679
37762
+
Tyr
GTA
[ENA]
¢þ
>WENV180668581
OCVV011264149
[OCVV] gut metagenome; gut
37679
37762
+
Tyr
GTA
[ENA]
¢þ
>WENV180753151
ODHT01006259
[ODHT] human metagenome; G_DNA_Stool
497
414
-
Tyr
GTA
[ENA]
¢þ
>WENV181441855
OGDN01025065
[OGDN] human gut metagenome; human gut
107
24
-
Tyr
GTA
[ENA]
¢þ
>WENV181480223
OGFG01037041
[OGFG] metagenome; Human gut stool
189
272
+
Tyr
GTA
[ENA]
¢þ
>WENV183098844
OLNF01001624
[OLNF] human gut metagenome; faeces
11303
11220
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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