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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.22115 (39 seq.)
>W1711024782
LRBG01000005
Betaproteobacteria
Paraburkholderia monticola [LRBG]
271672
271582
-
Ser
CGA
[ENA]
¡û
>W1711689276
MSDV01000012
Betaproteobacteria
Burkholderia sp. SRS-W-2-2016 [MSDV]
233004
233094
+
Ser
CGA
[ENA]
¡û
>W131167021
ARCY01000012
Betaproteobacteria
Paraburkholderia tuberum WSM4176 [ARCY]
595012
595102
+
Ser
CGA
[ENA]
¡û
>W131167116
ARDA01000001
Betaproteobacteria
Paraburkholderia atlantica JPY251 [ARDA]
271048
270958
-
Ser
CGA
[ENA]
¡û
>C011113
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
1312730
1312820
+
Ser
CGA
[Ensembl]
¡û
>w019562
AAUH01000005
Betaproteobacteria
Paraburkholderia phytofirmans PsJN [AAUH]
37510
37418
-
Ser
CGA
[ENA]
¡û
>WENV180028601
FTJE01116070
[FTJE] metagenome; soil
631
541
-
Ser
CGA
[ENA]
¢þ
>W141237359
BBJF01000011
Betaproteobacteria
Paraburkholderia ginsengisoli NBRC 100965 [BBJF]
262471
262381
-
Ser
CGA
[ENA]
¡û
>C08001910
CP001052
Betaproteobacteria
Paraburkholderia phytofirmans PsJN [CP001052, CP001053]
1179844
1179934
+
Ser
CGA
[Ensembl]
¡û
>WENV170622282
FUWD013095868
[FUWD] metagenome; unknown
779
869
+
Ser
CGA
[ENA]
¢þ
>WENV170629851
FUWD013283702
[FUWD] metagenome; unknown
5872
5782
-
Ser
CGA
[ENA]
¢þ
>W141462071
JFHE01000003
Betaproteobacteria
Caballeronia grimmiae [JFHE]
92110
92200
+
Ser
CGA
[ENA]
¡û
>W09113215
ABYL01000108
Betaproteobacteria
Burkholderia sp. H160 [ABYL]
10229
10319
+
Ser
CGA
[ENA]
¡û
>W1810356664
PVNC01000004
Betaproteobacteria
Paraburkholderia sp. BL18I3N2 [PVNC]
181210
181300
+
Ser
CGA
[ENA]
¡û
>W1810367899
PVZB01000005
Betaproteobacteria
Paraburkholderia sp. BL25I1N1 [PVZB]
102166
102256
+
Ser
CGA
[ENA]
¡û
>W1810788413
QREJ01000001
Betaproteobacteria
Paraburkholderia sp. BL27I4N3 [QREJ]
3332703
3332613
-
Ser
CGA
[ENA]
¡û
>W1810885005
QUNA01000001
Betaproteobacteria
Paraburkholderia sp. BL6669N2 [QUNA]
4643921
4644011
+
Ser
CGA
[ENA]
¡û
>W1810915095
QVQV01000004
Betaproteobacteria
Paraburkholderia sp. DHOC27 [QVQV]
507309
507219
-
Ser
CGA
[ENA]
¡û
>C151002209
AP014576
Betaproteobacteria
Burkholderia sp. RPE67 [AP014576, AP014577, AP014578]
702404
702494
+
Ser
CGA
-
¡û
>W10110566
ADCC01000001
Betaproteobacteria
Burkholderia sp. CCGE1002 [ADCC] CCGE1002 [ADCC]
440965
441055
+
Ser
CGA
[ENA]
¡û
>C10102473
CP002013
Betaproteobacteria
Paraburkholderia atlantica CCGE1002 [CP002013, CP002014, CP002015]
836165
836255
+
Ser
CGA
[Ensembl]
¡û
>W11113003
ADCC01000001
Betaproteobacteria
Burkholderia sp. CCGE1002 [ADCC] CCGE1002 [ADCC]
440965
441055
+
Ser
CGA
[ENA]
¡û
>W1511361430
JSBM01000016
Betaproteobacteria
Caballeronia zhejiangensis CEIB S4-3 [JSBM]
247954
248044
+
Ser
CGA
[ENA]
¡û
>W1511478739
JWHM01000051
Betaproteobacteria
Burkholderia sp. MR1 [JWHM]
240784
240874
+
Ser
CGA
[ENA]
¡û
>W1511683446
LFKV01000048
Betaproteobacteria
Candidatus Paraburkholderia kirkii kirkii UZHbot2 [LFKV]
161113
161203
+
Ser
CGA
[ENA]
¡û
>W1511684879
LFMX01000031
Betaproteobacteria
Candidatus Burkholderia humilis humilis UZHbot5 [LFMX]
22594
22504
-
Ser
CGA
[ENA]
¡û
>W11187619
CAFE01000213
Betaproteobacteria
Candidatus Paraburkholderia kirkii kirkii UZHbot1 [CAFE]
42408
42318
-
Ser
CGA
[ENA]
¡û
>C121005497
CP003087
Betaproteobacteria
Burkholderia sp. YI23 [CP003087, CP003088, CP003089]
733540
733630
+
Ser
CGA
[Ensembl]
¡û
>W1610205975
FCNV02000001
Betaproteobacteria
Caballeronia concitans LMG 29315 [FCNV]
953991
954081
+
Ser
CGA
[ENA]
¡û
>W1610206096
FCNX02000008
Betaproteobacteria
Caballeronia fortuita LMG 29320 [FCNX]
159649
159739
+
Ser
CGA
[ENA]
¡û
>W1610206151
FCNY02000018
Betaproteobacteria
Caballeronia cordobensis [FCNY]
89710
89800
+
Ser
CGA
[ENA]
¡û
>W1610206253
FCOA02000003
Betaproteobacteria
Caballeronia hypogeia LMG 29322 [FCOA]
428439
428349
-
Ser
CGA
[ENA]
¡û
>W1610206409
FCOD02000011
Betaproteobacteria
Caballeronia turbans LMG 29316 [FCOD]
113373
113463
+
Ser
CGA
[ENA]
¡û
>W1610206747
FCOJ02000014
Betaproteobacteria
Caballeronia glebae LMG 29325 [FCOJ]
115093
115003
-
Ser
CGA
[ENA]
¡û
>W1610207331
FCOX02000003
Betaproteobacteria
Caballeronia calidae LMG 29321 [FCOX]
40023
40113
+
Ser
CGA
[ENA]
¡û
>W1610872894
LRBG01000005
Betaproteobacteria
Paraburkholderia monticola [LRBG]
271672
271582
-
Ser
CGA
[ENA]
¡û
>W1710207391
FCNY02000018
Betaproteobacteria
Caballeronia cordobensis [FCNY]
89710
89800
+
Ser
CGA
[ENA]
¡û
>W1710526813
FNKP01000001
Betaproteobacteria
Paraburkholderia fungorum [FNKP]
1188622
1188712
+
Ser
CGA
[ENA]
¡û
>W1710527277
FNKX01000001
Betaproteobacteria
Paraburkholderia tuberum [FNKX]
2479250
2479340
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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