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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.221230 (4 seq.)
>A171001079
CP001857
Euryarchaeota
Archaeoglobus profundus DSM 5631 [CP001857]
928010
928090
+
Ser
GCT
-
¡û
>WENV180287918
OBIL01013307
[OBIL] metagenome; hydrothermal vent
605
524
-
Ser
GCT
[ENA]
¢þ
>WENV181212941
OFBU01002369
[OFBU] metagenome; hydrothermal vent
425
506
+
Ser
GCT
[ENA]
¢þ
>WENV181214474
OFBY01000409
[OFBY] metagenome; hydrothermal vent
1981
1900
-
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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