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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.222429 (81 seq.)
>W1711096442
LTHT01000061
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
162
86
-
Ile
GAT
[ENA]
¡û
>W1711138613
LVDZ01000058
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
137
61
-
Ile
GAT
[ENA]
¡û
>W1711139095
LVEQ01000026
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
1584
1660
+
Ile
GAT
[ENA]
¡û
>W1711139150
LVER01000081
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
137
61
-
Ile
GAT
[ENA]
¡û
>W1711139187
LVES01000015
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
1584
1660
+
Ile
GAT
[ENA]
¡û
>W1711139239
LVET01000052
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
137
61
-
Ile
GAT
[ENA]
¡û
>W1711139276
LVEU01000030
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
137
61
-
Ile
GAT
[ENA]
¡û
>W1711139323
LVEV01000044
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
158
82
-
Ile
GAT
[ENA]
¡û
>W1711139354
LVEW01000040
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
137
61
-
Ile
GAT
[ENA]
¡û
>W1711139403
LVEX01000068
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
137
61
-
Ile
GAT
[ENA]
¡û
>W1711139447
LVEY01000066
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
137
61
-
Ile
GAT
[ENA]
¡û
>W1711139481
LVEZ01000045
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
137
61
-
Ile
GAT
[ENA]
¡û
>W1711139491
LVFA01000006
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
137
61
-
Ile
GAT
[ENA]
¡û
>W1711139567
LVFB01000069
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
137
61
-
Ile
GAT
[ENA]
¡û
>W1711139613
LVFC01000052
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
137
61
-
Ile
GAT
[ENA]
¡û
>W1711139663
LVFD01000039
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
137
61
-
Ile
GAT
[ENA]
¡û
>W1711139704
LVFE01000040
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
137
61
-
Ile
GAT
[ENA]
¡û
>WENV180154317
OAUS01113029
[OAUS] human gut metagenome; faeces
67
143
+
Ile
GAT
[ENA]
¢þ
>W141054960
AOJP01000025
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AOJP]
1729
1805
+
Ile
GAT
[ENA]
¡û
>WENV181432463
OGDD01004801
[OGDD] metagenome; Human gut stool
5694
5618
-
Ile
GAT
[ENA]
¢þ
>WENV181623237
OGMH01013589
[OGMH] metagenome; Human gut stool
66
142
+
Ile
GAT
[ENA]
¢þ
>WENV181644338
OGNL01018879
[OGNL] metagenome; Human gut stool
66
142
+
Ile
GAT
[ENA]
¢þ
>WENV181899775
OGXU01032097
[OGXU] human gut metagenome; faeces
751
675
-
Ile
GAT
[ENA]
¢þ
>WENV182008147
OHBI01024953
[OHBI] human gut metagenome; feces
113
189
+
Ile
GAT
[ENA]
¢þ
>WENV182013714
OHBO01004475
[OHBO] human gut metagenome; feces
2217
2141
-
Ile
GAT
[ENA]
¢þ
>WENV182114749
OHIZ01004145
[OHIZ] human gut metagenome; feces
2248
2172
-
Ile
GAT
[ENA]
¢þ
>WENV182138588
OHKN01023893
[OHKN] human gut metagenome; feces
113
189
+
Ile
GAT
[ENA]
¢þ
>WENV182263293
OHTS01001310
[OHTS] human gut metagenome; feces
557
481
-
Ile
GAT
[ENA]
¢þ
>WENV182478367
OIQN01000199
[OIQN] human gut metagenome; human gut
1994
1918
-
Ile
GAT
[ENA]
¢þ
>WENV182498856
OITQ01007541
[OITQ] human gut metagenome; human gut
537
613
+
Ile
GAT
[ENA]
¢þ
>WENV182499026
OITR01005801
[OITR] human gut metagenome; human gut
813
737
-
Ile
GAT
[ENA]
¢þ
>WENV182499680
OITU01000104
[OITU] human gut metagenome; human gut
2642
2566
-
Ile
GAT
[ENA]
¢þ
>WENV182507767
OIVO01000617
[OIVO] human gut metagenome; human gut
2174
2250
+
Ile
GAT
[ENA]
¢þ
>WENV183017598
OLEW01000977
[OLEW] human gut metagenome; human gut
1299
1223
-
Ile
GAT
[ENA]
¢þ
>WENV183392339
OLZE01002967
[OLZE] human gut metagenome; feces
2294
2370
+
Ile
GAT
[ENA]
¢þ
>WENV183571572
OOCE01011487
[OOCE] human gut metagenome; human gut
135
59
-
Ile
GAT
[ENA]
¢þ
>WENV183576954
OOCJ01003437
[OOCJ] human gut metagenome; human gut
66
142
+
Ile
GAT
[ENA]
¢þ
>C181003918
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
1619315
1619391
+
Ile
GAT
-
¡û
>C181003931
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
3704024
3703948
-
Ile
GAT
-
¡û
>C181160913
CP028102
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [CP028102]
541221
541297
+
Ile
GAT
-
¡û
>C181160923
CP028102
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [CP028102]
658069
658145
+
Ile
GAT
-
¡û
>C181160989
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
1278797
1278873
+
Ile
GAT
-
¡û
>C181161007
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
3002594
3002518
-
Ile
GAT
-
¡û
>C181161098
CP028106
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [CP028106]
292678
292754
+
Ile
GAT
-
¡û
>C181161106
CP028106
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [CP028106]
932334
932410
+
Ile
GAT
-
¡û
>C181161177
CP028107
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [CP028107]
1054782
1054858
+
Ile
GAT
-
¡û
>C181161190
CP028107
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [CP028107]
290764
290688
-
Ile
GAT
-
¡û
>C181216742
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
42114
42190
+
Ile
GAT
-
¡û
>C181216790
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
1743764
1743688
-
Ile
GAT
-
¡û
>C191016036
CP019306
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1260 [CP019306]
814963
815039
+
Ile
GAT
-
¡û
>C191016046
CP019306
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1260 [CP019306]
2274187
2274111
-
Ile
GAT
-
¡û
>C191113350
CP033837
Fusobacteriota
Fusobacterium necrophorum FDAARGOS_565 [CP033837]
1185694
1185770
+
Ile
GAT
-
¡û
>C191113386
CP033837
Fusobacteriota
Fusobacterium necrophorum FDAARGOS_565 [CP033837]
457795
457719
-
Ile
GAT
-
¡û
>C191210208
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
1128427
1128503
+
Ile
GAT
-
¡û
>C191210234
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
2851606
2851530
-
Ile
GAT
-
¡û
>C191219273
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
3548817
3548893
+
Ile
GAT
-
¡û
>C191219306
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
1690533
1690457
-
Ile
GAT
-
¡û
>W1910194454
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
1377009
1377085
+
Ile
GAT
[ENA]
¡û
>W1910194495
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
883795
883719
-
Ile
GAT
[ENA]
¡û
>W1810818380
QSDE01000008
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
97023
97099
+
Ile
GAT
[ENA]
¡û
>W1810832225
QSOW01000017
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
136
60
-
Ile
GAT
[ENA]
¡û
>C11111522
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
1990066
1989990
-
Ile
GAT
[Ensembl]
¡û
>C11111524
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
1984713
1984637
-
Ile
GAT
[Ensembl]
¡û
>C11111531
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
1882481
1882405
-
Ile
GAT
[Ensembl]
¡û
>W121021782
AGWJ01000070
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
1811
1887
+
Ile
GAT
[ENA]
¡û
>W1610949653
LVDZ01000058
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
137
61
-
Ile
GAT
[ENA]
¡û
>W1610950103
LVEQ01000026
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
1584
1660
+
Ile
GAT
[ENA]
¡û
>W1610950158
LVER01000081
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
137
61
-
Ile
GAT
[ENA]
¡û
>W1610950195
LVES01000015
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
1584
1660
+
Ile
GAT
[ENA]
¡û
>W1610950247
LVET01000052
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
137
61
-
Ile
GAT
[ENA]
¡û
>W1610950284
LVEU01000030
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
137
61
-
Ile
GAT
[ENA]
¡û
>W1610950331
LVEV01000044
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
158
82
-
Ile
GAT
[ENA]
¡û
>W1610950362
LVEW01000040
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
137
61
-
Ile
GAT
[ENA]
¡û
>W1610950411
LVEX01000068
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
137
61
-
Ile
GAT
[ENA]
¡û
>W1610950455
LVEY01000066
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
137
61
-
Ile
GAT
[ENA]
¡û
>W1610950489
LVEZ01000045
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
137
61
-
Ile
GAT
[ENA]
¡û
>W1610950499
LVFA01000006
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
137
61
-
Ile
GAT
[ENA]
¡û
>W1610950575
LVFB01000069
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
137
61
-
Ile
GAT
[ENA]
¡û
>W1610950621
LVFC01000052
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
137
61
-
Ile
GAT
[ENA]
¡û
>W1610950671
LVFD01000039
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
137
61
-
Ile
GAT
[ENA]
¡û
>W1610950712
LVFE01000040
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
137
61
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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