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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.222899 (5 seq.)
>W1711391470
MELO01000067
Actinomycetota
Actinobacteria bacterium RBG_16_67_10 [MELO]
95
169
+
Pro
TGG
[ENA]
¡û
>WENV180392698
OBPP01003843
[OBPP] marine metagenome; ENVO:00002042
1114
1040
-
Pro
TGG
[ENA]
¢þ
>WENV170682492
LFIK01000202
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
38274
38350
+
Pro
TGG
[ENA]
¢þ
>WENV170682653
LFIK01000732
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
21742
21816
+
Pro
TGG
[ENA]
¢þ
>W1511582772
LATF01000010
Actinomycetota
Nitriliruptor alkaliphilus DSM 45188 [LATF]
83077
83003
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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