This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.222982 (103 seq.)
>W1710800441
LJVU01000475
Bacillota
Streptococcus pneumoniae [LJVU]
3475
3400
-
Met
CAT
[ENA]
¡û
>W131067842
ANQL01000008
Bacillota
Streptococcus agalactiae MRI Z1-201 [ANQL]
117
192
+
Met
CAT
[ENA]
¡û
>W1711315643
MAWB01000004
Bacillota
Streptococcus agalactiae [MAWB]
75
150
+
Met
CAT
[ENA]
¡û
>W1711316331
MAWN01000005
Bacillota
Streptococcus agalactiae [MAWN]
62774
62699
-
Met
CAT
[ENA]
¡û
>W1711316364
MAWN01000040
Bacillota
Streptococcus agalactiae [MAWN]
53
128
+
Met
CAT
[ENA]
¡û
>W1711316501
MAWQ01000003
Bacillota
Streptococcus agalactiae [MAWQ]
75
150
+
Met
CAT
[ENA]
¡û
>W1711316575
MAWR01000019
Bacillota
Streptococcus agalactiae [MAWR]
517
442
-
Met
CAT
[ENA]
¡û
>W1711316622
MAWR01000041
Bacillota
Streptococcus agalactiae [MAWR]
313
238
-
Met
CAT
[ENA]
¡û
>W1711316629
MAWR01000056
Bacillota
Streptococcus agalactiae [MAWR]
151
76
-
Met
CAT
[ENA]
¡û
>W1711316646
MAWS01000005
Bacillota
Streptococcus agalactiae [MAWS]
858
933
+
Met
CAT
[ENA]
¡û
>W1711328204
MBLC01000005
Bacillota
Streptococcus agalactiae [MBLC]
858
933
+
Met
CAT
[ENA]
¡û
>W1711328770
MBLL01000018
Bacillota
Streptococcus agalactiae [MBLL]
778
853
+
Met
CAT
[ENA]
¡û
>W1711350002
MCQV01000012
Bacillota
Streptococcus agalactiae serogroup III [MCQV]
834
909
+
Met
CAT
[ENA]
¡û
>W1711978926
NDGD01000002
Bacillota
Streptococcus agalactiae [NDGD]
1049
1124
+
Met
CAT
[ENA]
¡û
>C019578
CP000114
Bacillota
Streptococcus agalactiae A909 [CP000114]
27933
28006
+
Met
CAT
[Ensembl]
¡û
>C019657
AL732656
Bacillota
Streptococcus agalactiae [AL732656]
28010
28083
+
Met
CAT
[Ensembl]
¡û
>C171128219
LT545678
Bacillota
Streptococcus agalactiae [LT545678]
28076
28151
+
Met
CAT
-
¡û
>C171130990
LT714196
Bacillota
Streptococcus agalactiae [LT714196]
28016
28091
+
Met
CAT
-
¡û
>w008926
AAJS01000151
Bacillota
Streptococcus agalactiae H36B [AAJS]
187
265
+
Met
CAT
[ENA]
¡û
>w008908
AAJS01000131
Bacillota
Streptococcus agalactiae H36B [AAJS]
581
659
+
Met
CAT
[ENA]
¡û
>w008844
AAJS01000005
Bacillota
Streptococcus agalactiae H36B [AAJS]
11693
11771
+
Met
CAT
[ENA]
¡û
>W141089278
AUVX01000015
Bacillota
Streptococcus agalactiae SGBS010 [AUVX]
62892
62817
-
Met
CAT
[ENA]
¡û
>WENV182736803
OJQH01020147
[OJQH] human gut metagenome; stool sample
794
718
-
Met
CAT
[ENA]
¢þ
>C181053844
CP021771
Bacillota
Streptococcus agalactiae B507 [CP021771]
1910811
1910886
+
Met
CAT
-
¡û
>W1910200432
FJOL01000110
Bacillota
Streptococcus agalactiae [FJOL]
242
167
-
Met
CAT
[ENA]
¡û
>W1910200542
FJOO01000135
Bacillota
Streptococcus agalactiae [FJOO]
72
147
+
Met
CAT
[ENA]
¡û
>W1910201081
FJPF01000176
Bacillota
Streptococcus agalactiae [FJPF]
242
167
-
Met
CAT
[ENA]
¡û
>W1910201229
FJPK01000186
Bacillota
Streptococcus agalactiae [FJPK]
212
137
-
Met
CAT
[ENA]
¡û
>W1910201473
FJPS01000160
Bacillota
Streptococcus agalactiae [FJPS]
52
127
+
Met
CAT
[ENA]
¡û
>W1910201825
FJQE01000213
Bacillota
Streptococcus agalactiae [FJQE]
40
115
+
Met
CAT
[ENA]
¡û
>W1910201920
FJQI01000071
Bacillota
Streptococcus agalactiae [FJQI]
222
147
-
Met
CAT
[ENA]
¡û
>W1910202022
FJQL01000074
Bacillota
Streptococcus agalactiae [FJQL]
242
167
-
Met
CAT
[ENA]
¡û
>W1910202284
FJQS01000170
Bacillota
Streptococcus agalactiae [FJQS]
242
167
-
Met
CAT
[ENA]
¡û
>W1910202337
FJQU01000133
Bacillota
Streptococcus agalactiae [FJQU]
72
147
+
Met
CAT
[ENA]
¡û
>W1910202397
FJQV01000143
Bacillota
Streptococcus agalactiae [FJQV]
82
157
+
Met
CAT
[ENA]
¡û
>W1910202695
FJRF01000055
Bacillota
Streptococcus agalactiae [FJRF]
222
147
-
Met
CAT
[ENA]
¡û
>W1910202922
FJRO01000023
Bacillota
Streptococcus agalactiae [FJRO]
222
147
-
Met
CAT
[ENA]
¡û
>W1910203072
FJRT01000122
Bacillota
Streptococcus agalactiae [FJRT]
222
147
-
Met
CAT
[ENA]
¡û
>W1910204057
FJTF01000097
Bacillota
Streptococcus agalactiae [FJTF]
38
113
+
Met
CAT
[ENA]
¡û
>W1910204339
FJTQ01000126
Bacillota
Streptococcus agalactiae [FJTQ]
52
127
+
Met
CAT
[ENA]
¡û
>W1910204440
FJTU01000124
Bacillota
Streptococcus agalactiae [FJTU]
208
133
-
Met
CAT
[ENA]
¡û
>W1910204635
FJUD01000078
Bacillota
Streptococcus agalactiae [FJUD]
208
133
-
Met
CAT
[ENA]
¡û
>W1911577643
PDXK01000006
Bacillota
Streptococcus agalactiae FDAARGOS_413 [PDXK]
1406967
1406892
-
Met
CAT
[ENA]
¡û
>W1911597659
PNOW01000017
Bacillota
Streptococcus agalactiae sz_17 [PNOW]
906
981
+
Met
CAT
[ENA]
¡û
>W1911634027
PVLO01000013
Bacillota
Streptococcus agalactiae SApx2AQUAVET [PVLO]
62953
62878
-
Met
CAT
[ENA]
¡û
>W1911800996
QYTF01000005
Bacillota
Streptococcus agalactiae ILRI021 [QYTF]
32908
32983
+
Met
CAT
[ENA]
¡û
>W1911801089
QYTG01000008
Bacillota
Streptococcus agalactiae ILRI022 [QYTG]
911
986
+
Met
CAT
[ENA]
¡û
>W1911801280
QYTJ01000001
Bacillota
Streptococcus agalactiae ILRI125 [QYTJ]
1431
1506
+
Met
CAT
[ENA]
¡û
>W1810273540
PSOY01000028
Bacillota
Streptococcus agalactiae UBN6 [PSOY]
316
241
-
Met
CAT
[ENA]
¡û
>W1810606905
QGRL01000001
Bacillota
Streptococcus agalactiae QMA0357 [QGRL]
815
890
+
Met
CAT
[ENA]
¡û
>W1810607693
QGSJ01000001
Bacillota
Streptococcus agalactiae QMA0266 [QGSJ]
815
890
+
Met
CAT
[ENA]
¡û
>W1810703215
QMGV01000013
Bacillota
Aerococcus mictus UMB0267 [QMGV]
955
1030
+
Met
CAT
[ENA]
¡û
>W1810703593
QMHC01000001
Bacillota
Aerococcus mictus UMB1016 [QMHC]
949
1024
+
Met
CAT
[ENA]
¡û
>W1810703666
QMHD01000012
Bacillota
Aerococcus tenax UMB1741 [QMHD]
923
998
+
Met
CAT
[ENA]
¡û
>W1810703773
QMHF01000002
Bacillota
Aerococcus mictus UMB2354 [QMHF]
377682
377607
-
Met
CAT
[ENA]
¡û
>W1810704130
QMHL01000006
Bacillota
Aerococcus mictus UMB7382 [QMHL]
923
998
+
Met
CAT
[ENA]
¡û
>C151014402
CP006910
Bacillota
Streptococcus agalactiae CNCTC 10/84 [CP006910]
27992
28067
+
Met
CAT
[Ensembl]
¡û
>W1510067113
CDCR01000128
Bacillota
Streptococcus agalactiae Child12-2 [CDCR]
242
167
-
Met
CAT
[ENA]
¡û
>W1510067193
CDCT01000058
Bacillota
Streptococcus agalactiae Child13 [CDCT]
242
167
-
Met
CAT
[ENA]
¡û
>W1510067957
CDDG01000048
Bacillota
Streptococcus agalactiae Child1 [CDDG]
72
147
+
Met
CAT
[ENA]
¡û
>W1510068468
CDDP01000085
Bacillota
Streptococcus agalactiae Mother16 [CDDP]
242
167
-
Met
CAT
[ENA]
¡û
>W1510068494
CDDQ01000062
Bacillota
Streptococcus agalactiae Child14 [CDDQ]
242
167
-
Met
CAT
[ENA]
¡û
>W1510068862
CDDX01000041
Bacillota
Streptococcus agalactiae Mother4 [CDDX]
242
167
-
Met
CAT
[ENA]
¡û
>W1510069356
CDEJ01000077
Bacillota
Streptococcus agalactiae Mother8 [CDEJ]
72
147
+
Met
CAT
[ENA]
¡û
>W1510069567
CDEP01000053
Bacillota
Streptococcus agalactiae Bangui-IP-59 [CDEP]
44
119
+
Met
CAT
[ENA]
¡û
>W1510140102
CGBT01000007
Bacillota
Streptococcus agalactiae DE-NI-012 [CGBT]
63298
63223
-
Met
CAT
[ENA]
¡û
>W1510140668
CGCE01000007
Bacillota
Streptococcus agalactiae CZ-NI-007 [CGCE]
62727
62652
-
Met
CAT
[ENA]
¡û
>W1510205646
CHZB01000012
Bacillota
Streptococcus agalactiae IT-NI-037 [CHZB]
69810
69735
-
Met
CAT
[ENA]
¡û
>W1510454351
CPVM01000008
Bacillota
Streptococcus agalactiae DE-NI-036 [CPVM]
63651
63576
-
Met
CAT
[ENA]
¡û
>W1510454659
CPVS01000013
Bacillota
Streptococcus agalactiae DK-NI-021 [CPVS]
780
855
+
Met
CAT
[ENA]
¡û
>W1510455087
CPWB01000009
Bacillota
Streptococcus agalactiae RBH09 [CPWB]
62870
62795
-
Met
CAT
[ENA]
¡û
>W1510457617
CPXY01000005
Bacillota
Streptococcus agalactiae IT-NI-028 [CPXY]
96767
96842
+
Met
CAT
[ENA]
¡û
>W1510458297
CPYK01000014
Bacillota
Streptococcus agalactiae BG-NI-003 [CPYK]
454
529
+
Met
CAT
[ENA]
¡û
>W1510464721
CQCW01000013
Bacillota
Streptococcus agalactiae DK-NI-007 [CQCW]
63765
63690
-
Met
CAT
[ENA]
¡û
>W1511437408
JUKX01000015
Bacillota
Streptococcus agalactiae 986_SAGA [JUKX]
231
156
-
Met
CAT
[ENA]
¡û
>W1511621647
LCVC01000012
Bacillota
Streptococcus agalactiae ES-PW-068 [LCVC]
64669
64594
-
Met
CAT
[ENA]
¡û
>W1511623414
LCXE01000010
Bacillota
Streptococcus agalactiae GB-PW-094 [LCXE]
99
174
+
Met
CAT
[ENA]
¡û
>W1511623533
LCXH01000011
Bacillota
Streptococcus agalactiae GB-PW-110 [LCXH]
97
172
+
Met
CAT
[ENA]
¡û
>C161029361
CP010874
Bacillota
Streptococcus agalactiae CU_GBS_08 [CP010874]
900
975
+
Met
CAT
-
¡û
>C161067651
CP014163
Bacillota
Aerococcus urinaehominis CCUG42038B [CP014163]
1496244
1496319
+
Met
CAT
[Ensembl]
¡û
>W121116560
ALSF01000057
Bacillota
Streptococcus agalactiae MRI Z1-216 [ALSF]
18615
18540
-
Met
CAT
[ENA]
¡û
>W121117301
ALSY01000069
Bacillota
Streptococcus agalactiae GB00174 [ALSY]
45028
44953
-
Met
CAT
[ENA]
¡û
>W1610067119
BCQH01000001
Bacillota
Aerococcus urinae NBRC 15544 = CCUG 36881 [BCQH]
1127
1202
+
Met
CAT
[ENA]
¡û
>C131007468
CP003810
Bacillota
Streptococcus agalactiae GD201008-001 [CP003810]
27928
28003
+
Met
CAT
[Ensembl]
¡û
>W1610417071
FIWZ01000004
Bacillota
Streptococcus pneumoniae [FIWZ]
875
950
+
Met
CAT
[ENA]
¡û
>W1610664398
LJVU01000475
Bacillota
Streptococcus pneumoniae [LJVU]
3475
3400
-
Met
CAT
[ENA]
¡û
>W1611055344
MANC01000003
Bacillota
Streptococcus agalactiae [MANC]
779
854
+
Met
CAT
[ENA]
¡û
>W1611059570
MAVX01000003
Bacillota
Streptococcus agalactiae [MAVX]
779
854
+
Met
CAT
[ENA]
¡û
>W1611059732
MAWA01000001
Bacillota
Streptococcus agalactiae [MAWA]
856
931
+
Met
CAT
[ENA]
¡û
>W1611059801
MAWB01000004
Bacillota
Streptococcus agalactiae [MAWB]
75
150
+
Met
CAT
[ENA]
¡û
>W1611060099
MAWG01000002
Bacillota
Streptococcus agalactiae [MAWG]
777
852
+
Met
CAT
[ENA]
¡û
>W1611060489
MAWN01000005
Bacillota
Streptococcus agalactiae [MAWN]
62774
62699
-
Met
CAT
[ENA]
¡û
>W1611060522
MAWN01000040
Bacillota
Streptococcus agalactiae [MAWN]
53
128
+
Met
CAT
[ENA]
¡û
>W1611060620
MAWP01000044
Bacillota
Streptococcus agalactiae [MAWP]
836
911
+
Met
CAT
[ENA]
¡û
>W1611060659
MAWQ01000003
Bacillota
Streptococcus agalactiae [MAWQ]
75
150
+
Met
CAT
[ENA]
¡û
>W1611060733
MAWR01000019
Bacillota
Streptococcus agalactiae [MAWR]
517
442
-
Met
CAT
[ENA]
¡û
>W1611060780
MAWR01000041
Bacillota
Streptococcus agalactiae [MAWR]
313
238
-
Met
CAT
[ENA]
¡û
>W1611060787
MAWR01000056
Bacillota
Streptococcus agalactiae [MAWR]
151
76
-
Met
CAT
[ENA]
¡û
>W1611060804
MAWS01000005
Bacillota
Streptococcus agalactiae [MAWS]
858
933
+
Met
CAT
[ENA]
¡û
>W1611063665
MBKL01000005
Bacillota
Streptococcus agalactiae [MBKL]
858
933
+
Met
CAT
[ENA]
¡û
>W1611064342
MBLC01000005
Bacillota
Streptococcus agalactiae [MBLC]
858
933
+
Met
CAT
[ENA]
¡û
>W1611064908
MBLL01000018
Bacillota
Streptococcus agalactiae [MBLL]
778
853
+
Met
CAT
[ENA]
¡û
>W1710416807
FIWZ01000004
Bacillota
Streptococcus pneumoniae [FIWZ]
875
950
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK