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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.223157 (4 seq.)
>W1712002225
NEED01000023
Cyanobacteriota
unicellular cyanobacterium SU2 [NEED]
287919
287999
+
Leu
TAG
[ENA]
¡û
>W08008938
ABLR01000007
Cyanobacteriota
Rippkaea orientalis PCC 8801 [ABLR]
201575
201655
+
Leu
TAG
[ENA]
¡û
>C09103622
CP001287
Cyanobacteriota
Rippkaea orientalis PCC 8801 [CP001287]
3722471
3722551
+
Leu
TAG
[Ensembl]
¡û
>C10104730
CP001701
Cyanobacteriota
Rippkaea orientalis [CP001701]
2570691
2570611
-
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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