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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.223301 (27 seq.)
>W1711305359
MAMQ01000048
Campylobacterota
Helicobacter sp. CLO-3 [MAMQ]
757
833
+
Arg
TCT
[ENA]
¡û
>W1711525211
MLQN01000004
Campylobacterota
Helicobacter sp. CLO-3 [MLQN]
88049
87973
-
Arg
TCT
[ENA]
¡û
>WENV180116950
OARB01000305
[OARB] human gut metagenome; ENVO:feces
847
771
-
Arg
TCT
[ENA]
¢þ
>WENV180117941
OARM01003074
[OARM] human gut metagenome; ENVO:feces
42
118
+
Arg
TCT
[ENA]
¢þ
>WENV180229207
OBCH01004017
[OBCH] human gut metagenome; human gut
1299
1223
-
Arg
TCT
[ENA]
¢þ
>WENV183647442
OQVS01000707
[OQVS] human gut metagenome; human gut
18299
18375
+
Arg
TCT
[ENA]
¢þ
>WENV183651835
OQVU01005615
[OQVU] human gut metagenome; human gut
3486
3562
+
Arg
TCT
[ENA]
¢þ
>WENV183705176
PDWI01001185
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5327
5251
-
Arg
TCT
[ENA]
¢þ
>WENV183705178
PDWI01001185
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5098
5022
-
Arg
TCT
[ENA]
¢þ
>W1910550668
FZRC01000067
Campylobacterota
Helicobacter sp. 'CLO3_human' [FZRC]
31999
31923
-
Arg
TCT
[ENA]
¡û
>W1511353849
JRPR01000037
Campylobacterota
Helicobacter jaachi MIT 09-6949 [JRPR]
3576
3652
+
Arg
TCT
[ENA]
¡û
>C161025872
CP010462
Campylobacterota
Campylobacter jejuni CJ677CC100 [CP010462]
1475833
1475757
-
Arg
TCT
-
¡û
>C161026072
CP010467
Campylobacterota
Campylobacter jejuni CJ677CC024 [CP010467]
1568499
1568423
-
Arg
TCT
-
¡û
>C161026312
CP010473
Campylobacterota
Campylobacter jejuni CJ677CC534 [CP010473]
1472771
1472695
-
Arg
TCT
-
¡û
>C161026472
CP010477
Campylobacterota
Campylobacter jejuni CJ677CC526 [CP010477]
1577707
1577631
-
Arg
TCT
-
¡û
>C161026552
CP010479
Campylobacterota
Campylobacter jejuni CJ677CC036 [CP010479]
1558061
1557985
-
Arg
TCT
-
¡û
>C161026792
CP010485
Campylobacterota
Campylobacter jejuni CJ677CC086 [CP010485]
1475869
1475793
-
Arg
TCT
-
¡û
>C161027151
CP010494
Campylobacterota
Campylobacter jejuni CJ677CC059 [CP010494]
1534218
1534142
-
Arg
TCT
-
¡û
>C161027232
CP010496
Campylobacterota
Campylobacter jejuni CJ677CC032 [CP010496]
1575887
1575811
-
Arg
TCT
-
¡û
>C161027354
CP010499
Campylobacterota
Campylobacter jejuni CJ677CC542 [CP010499]
1535144
1535068
-
Arg
TCT
-
¡û
>C161027672
CP010507
Campylobacterota
Campylobacter jejuni CJ677CC078 [CP010507]
1524552
1524476
-
Arg
TCT
-
¡û
>C161027712
CP010508
Campylobacterota
Campylobacter jejuni CJ677CC523 [CP010508]
1576726
1576650
-
Arg
TCT
-
¡û
>W1610173687
FBFY01000012
Campylobacterota
Campylobacter jejuni [FBFY]
96797
96873
+
Arg
TCT
[ENA]
¡û
>W1610522240
JNUR01000043
Campylobacterota
Helicobacter pullorum [JNUR]
52347
52423
+
Arg
TCT
[ENA]
¡û
>W1611054826
MAMQ01000048
Campylobacterota
Helicobacter sp. CLO-3 [MAMQ]
757
833
+
Arg
TCT
[ENA]
¡û
>W1710175303
FBFY01000012
Campylobacterota
Campylobacter jejuni [FBFY]
96797
96873
+
Arg
TCT
[ENA]
¡û
>W1710622166
JNUR01000043
Campylobacterota
Helicobacter pullorum [JNUR]
52347
52423
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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