This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.22336 (24 seq.)
>W1711227984
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
249451
249361
-
Ser
GCT
[ENA]
¡û
>W1711227988
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
248940
248850
-
Ser
GCT
[ENA]
¡û
>W1711462739
MJIC01000010
Gammaproteobacteria
Alteromonas lipolytica [MJIC]
130208
130298
+
Ser
GCT
[ENA]
¡û
>WENV182541986
OJAV01000158
[OJAV] seawater metagenome; Sea water
12381
12471
+
Ser
GCT
[ENA]
¢þ
>WENV182542665
OJAZ01000404
[OJAZ] seawater metagenome; Sea water
20844
20934
+
Ser
GCT
[ENA]
¢þ
>WENV182550275
OJBZ01029074
[OJBZ] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182552492
OJCK01000600
[OJCK] seawater metagenome; Sea water
4210
4120
-
Ser
GCT
[ENA]
¢þ
>WENV182554936
OJCY01000036
[OJCY] seawater metagenome; Sea water
43351
43441
+
Ser
GCT
[ENA]
¢þ
>WENV182555818
OJDD01001370
[OJDD] seawater metagenome; Sea water
209
119
-
Ser
GCT
[ENA]
¢þ
>WENV182562441
OJDZ01003151
[OJDZ] seawater metagenome; Sea water
3426
3516
+
Ser
GCT
[ENA]
¢þ
>WENV182567668
OJEP01000038
[OJEP] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182573206
OJFP01000332
[OJFP] seawater metagenome; Sea water
2606
2696
+
Ser
GCT
[ENA]
¢þ
>WENV182578450
OJGO01000020
[OJGO] seawater metagenome; Sea water
87541
87631
+
Ser
GCT
[ENA]
¢þ
>WENV182580827
OJGW01015920
[OJGW] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182592694
OJIR01010833
[OJIR] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV170146533
CENZ01061323
[CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
167
77
-
Ser
GCT
[ENA]
¢þ
>C191073105
CP031010
Gammaproteobacteria
Alteromonas sp. RKMC-009 [CP031010]
1553367
1553457
+
Ser
GCT
-
¡û
>W1911641200
PYHU01000005
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
308455
308365
-
Ser
GCT
[ENA]
¡û
>C11100857
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
2940025
2939935
-
Ser
GCT
[Ensembl]
¡û
>C161051417
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
2780517
2780427
-
Ser
GCT
[Ensembl]
¡û
>C161058130
CP013650
Gammaproteobacteria
Lacimicrobium alkaliphilum YelD216 [CP013650]
3002975
3002885
-
Ser
GCT
[Ensembl]
¡û
>C161062076
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
2254825
2254735
-
Ser
GCT
-
¡û
>W1611011948
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
249451
249361
-
Ser
GCT
[ENA]
¡û
>W1611011952
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
248940
248850
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK