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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.223495 (4 seq.)
>WENV183729836
PJTR01000108
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
70593
70510
-
Leu
TAA
[ENA]
¢þ
>WENV183731461
PJTT01000005
[PJTT] soil metagenome; Soil (2) enriched on wood chips
70443
70360
-
Leu
TAA
[ENA]
¢þ
>WENV183743605
PJUJ01009662
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
861
778
-
Leu
TAA
[ENA]
¢þ
>WENV183745207
PJUL01005929
[PJUL] feces metagenome; Chicken feces enriched on filter paper
1229
1312
+
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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