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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.224292 (39 seq.)
>W1710989964
LPWU01000130
Alphaproteobacteria
Acetobacter pasteurianus [LPWU]
25079
25155
+
Pro
CGG
[ENA]
¡û
>W1711257953
LYUD01000114
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
17922
17998
+
Pro
CGG
[ENA]
¡û
>C171036165
CP015164
Alphaproteobacteria
Acetobacter ascendens LMG 1590 [CP015164]
2483521
2483445
-
Pro
CGG
-
¡û
>C171120295
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
1236043
1235967
-
Pro
CGG
-
¡û
>C171120314
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
1289042
1289118
+
Pro
CGG
-
¡û
>C171126413
CP021922
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101468 [CP021922]
1348443
1348519
+
Pro
CGG
-
¡û
>WENV170435510
CEUS01483110
[CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
423
347
-
Pro
CGG
[ENA]
¢þ
>WENV170457646
CEVA01488723
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
51
127
+
Pro
CGG
[ENA]
¢þ
>W141428588
JEOA01000001
Alphaproteobacteria
Acetobacter aceti 1023 [JEOA]
321280
321356
+
Pro
CGG
[ENA]
¡û
>C181063315
CP022374
Alphaproteobacteria
Acetobacter oryzifermentans dm [CP022374]
3119297
3119221
-
Pro
CGG
-
¡û
>C181088284
CP023657
Alphaproteobacteria
Acetobacter pomorum BDGP5 [CP023657]
1557893
1557969
+
Pro
CGG
-
¡û
>C181193683
CP030871
Alphaproteobacteria
Acetobacter sp. JWB [CP030871]
7849
7773
-
Pro
CGG
-
¡û
>W1910007900
BDER01000001
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 [BDER]
10333
10257
-
Pro
CGG
[ENA]
¡û
>W1910007991
BDES01000069
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
112987
112911
-
Pro
CGG
[ENA]
¡û
>W1910008006
BDET01000001
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3222 [BDET]
58849
58773
-
Pro
CGG
[ENA]
¡û
>W1910008055
BDEU01000001
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
1190
1114
-
Pro
CGG
[ENA]
¡û
>W1910008152
BDEV01000100
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
949
873
-
Pro
CGG
[ENA]
¡û
>W1910008210
BDEW01000091
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3279 [BDEW]
896
820
-
Pro
CGG
[ENA]
¡û
>W1910008258
BDEX01000096
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
1190
1114
-
Pro
CGG
[ENA]
¡û
>W1910008362
BDEZ01000056
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3299 [BDEZ]
85878
85802
-
Pro
CGG
[ENA]
¡û
>C141012377
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
1554335
1554259
-
Pro
CGG
[Ensembl]
¡û
>W1910657437
MAPU01000003
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
85917
85841
-
Pro
CGG
[ENA]
¡û
>W1910753224
MKHC01000012
Alphaproteobacteria
Acetobacter pasteurianus BCRC14145 [MKHC]
10251
10175
-
Pro
CGG
[ENA]
¡û
>W1810069684
PEBQ01000037
Alphaproteobacteria
Acetobacter pomorum LHT 2458 [PEBQ]
6097
6173
+
Pro
CGG
[ENA]
¡û
>C10100663
AP011163
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01-42C [AP011163]
2799515
2799439
-
Pro
CGG
[Ensembl]
¡û
>C10100717
AP011121
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01 [AP011121]
2891769
2891693
-
Pro
CGG
[Ensembl]
¡û
>C10100774
AP011128
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-03 [AP011128]
2891561
2891485
-
Pro
CGG
[Ensembl]
¡û
>C10100831
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
2890318
2890242
-
Pro
CGG
[Ensembl]
¡û
>C10100888
AP011170
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-12 [AP011170]
2888898
2888822
-
Pro
CGG
[Ensembl]
¡û
>C10101002
AP011149
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-26 [AP011149]
2891583
2891507
-
Pro
CGG
[Ensembl]
¡û
>C10101059
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
2888916
2888840
-
Pro
CGG
[Ensembl]
¡û
>W1511271155
JOKL01000080
Alphaproteobacteria
Acetobacter pomorum DmCS_004 [JOKL]
45883
45959
+
Pro
CGG
[ENA]
¡û
>C161001901
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
2896356
2896280
-
Pro
CGG
-
¡û
>C161031449
CP011120
Alphaproteobacteria
Acetobacter oryzifermentans SLV-7 [CP011120]
2794605
2794529
-
Pro
CGG
[Ensembl]
¡û
>W121122952
BACF01000004
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [BACF]
25079
25155
+
Pro
CGG
[ENA]
¡û
>W121123002
BACG01000009
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [BACG]
73311
73387
+
Pro
CGG
[ENA]
¡û
>W121126865
CADO01000020
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [CADO]
15908
15984
+
Pro
CGG
[ENA]
¡û
>W121126908
CADQ01000031
Alphaproteobacteria
Acetobacter pasteurianus 3P3 [CADQ]
73445
73521
+
Pro
CGG
[ENA]
¡û
>W1611020425
LYUD01000114
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
17922
17998
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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