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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.224534 (118 seq.)
>A171000002
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
167476
167551
+
Tyr
GTA
-
¡û
>A171000738
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
2471680
2471754
+
Tyr
GTA
-
¡û
>A171000803
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
164608
164535
-
Tyr
GTA
-
¡û
>A171001294
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
1007291
1007365
+
Tyr
GTA
-
¡û
>A171002469
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
1562564
1562490
-
Tyr
GTA
-
¡û
>A171002634
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
2432685
2432611
-
Tyr
GTA
-
¡û
>A171002709
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
2413868
2413941
+
Tyr
GTA
-
¡û
>A171003040
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
800150
800224
+
Tyr
GTA
-
¡û
>A171003099
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
2444897
2444971
+
Tyr
GTA
-
¡û
>A171003182
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
1857431
1857357
-
Tyr
GTA
-
¡û
>A171004143
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
2040402
2040477
+
Tyr
GTA
-
¡û
>A171004169
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
715250
715324
+
Tyr
GTA
-
¡û
>A171004394
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
532033
532107
+
Tyr
GTA
-
¡û
>A171005824
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
1045747
1045673
-
Tyr
GTA
-
¡û
>A171006851
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
915075
915149
+
Tyr
GTA
-
¡û
>A171006913
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
1959518
1959591
+
Tyr
GTA
-
¡û
>A171007149
FR746099
Euryarchaeota
Haloquadratum walsbyi C23 DSM 16854 [FR746099]
1840651
1840725
+
Tyr
GTA
-
¡û
>A171007238
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
2163453
2163527
+
Tyr
GTA
-
¡û
>A171007280
HF582854
Euryarchaeota
Natronomonas moolapensis 8.8.11 [HF582854]
2869578
2869652
+
Tyr
GTA
-
¡û
>A171007433
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
369528
369602
+
Tyr
GTA
-
¡û
>WENV170008934
APHM01015913
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
910
836
-
Tyr
GTA
[ENA]
¢þ
>WENV170009135
APHM01021432
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
7783
7857
+
Tyr
GTA
[ENA]
¢þ
>At0782
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
1796729
1796656
-
Tyr
GTA
[Ensembl]
¡û
>At0853
AM180088
Euryarchaeota
Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
1778178
1778251
+
Tyr
GTA
[Ensembl]
¡û
>At1705
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
2576422
2576495
+
Tyr
GTA
[Ensembl]
¡û
>WENV170659854
JXWS01010353
[JXWS] soil metagenome; rice field; elevated CO2
134
60
-
Tyr
GTA
[ENA]
¢þ
>WENV170659921
JXWS01037910
[JXWS] soil metagenome; rice field; elevated CO2
231
306
+
Tyr
GTA
[ENA]
¢þ
>WENV170681166
LFFM01000148
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
30925
30999
+
Tyr
GTA
[ENA]
¢þ
>WENV170681255
LFFM01000294
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
20666
20740
+
Tyr
GTA
[ENA]
¢þ
>WENV170681393
LFFM01000717
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
11913
11837
-
Tyr
GTA
[ENA]
¢þ
>WENV170681424
LFFM01000775
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6854
6928
+
Tyr
GTA
[ENA]
¢þ
>WENV170702059
LKMJ01000419
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
30969
30895
-
Tyr
GTA
[ENA]
¢þ
>WENV170702084
LKMJ01000496
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
19651
19577
-
Tyr
GTA
[ENA]
¢þ
>WENV170702211
LKMJ01000862
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
24272
24198
-
Tyr
GTA
[ENA]
¢þ
>WENV170702256
LKMJ01001097
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
22143
22069
-
Tyr
GTA
[ENA]
¢þ
>WENV170702339
LKMJ01001375
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
14492
14418
-
Tyr
GTA
[ENA]
¢þ
>WENV170702405
LKMJ01001770
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
12854
12780
-
Tyr
GTA
[ENA]
¢þ
>WENV170702441
LKMJ01001953
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
17580
17506
-
Tyr
GTA
[ENA]
¢þ
>WENV170703154
LKMJ01007311
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
672
599
-
Tyr
GTA
[ENA]
¢þ
>WENV170703458
LKMJ01012119
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2065
2141
+
Tyr
GTA
[ENA]
¢þ
>WENV170703497
LKMJ01012631
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6123
6197
+
Tyr
GTA
[ENA]
¢þ
>W1910006877
BBMO01000002
Euryarchaeota
Halapricum salinum CBA1105 [BBMO]
1060045
1060119
+
Tyr
GTA
[ENA]
¡û
>W1910011016
BDJH01000002
Euryarchaeota
Salella cibi CBA1134 [BDJH]
1933406
1933480
+
Tyr
GTA
[ENA]
¡û
>W1910175113
BIXZ01000003
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
119029
119103
+
Tyr
GTA
[ENA]
¡û
>W1910226762
FNBK01000027
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
12698
12623
-
Tyr
GTA
[ENA]
¡û
>W1910226877
FNFC01000009
Euryarchaeota
Halovenus aranensis IBRC-M10015 [FNFC]
136010
136084
+
Tyr
GTA
[ENA]
¡û
>W1910226897
FNFE01000001
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
409382
409456
+
Tyr
GTA
[ENA]
¡û
>W1910227070
FNIA01000027
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
2149
2076
-
Tyr
GTA
[ENA]
¡û
>W1910227141
FNLC01000002
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
1167094
1167020
-
Tyr
GTA
[ENA]
¡û
>W1910228363
FNOF01000003
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
128657
128731
+
Tyr
GTA
[ENA]
¡û
>W1910229330
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
986349
986275
-
Tyr
GTA
[ENA]
¡û
>W1910229820
FOFD01000004
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
1488
1414
-
Tyr
GTA
[ENA]
¡û
>W1910229885
FOIC01000002
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
144770
144696
-
Tyr
GTA
[ENA]
¡û
>W1910229949
FOIS01000003
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
314376
314302
-
Tyr
GTA
[ENA]
¡û
>W1910230257
FOKW01000010
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
93198
93272
+
Tyr
GTA
[ENA]
¡û
>W1910230443
FORO01000011
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
35606
35680
+
Tyr
GTA
[ENA]
¡û
>W1910230801
FOZK01000002
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
687310
687383
+
Tyr
GTA
[ENA]
¡û
>W1910230841
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
861553
861479
-
Tyr
GTA
[ENA]
¡û
>W1910340450
FTNO01000001
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
515247
515321
+
Tyr
GTA
[ENA]
¡û
>W1910340504
FTNP01000002
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
442495
442421
-
Tyr
GTA
[ENA]
¡û
>W1910340526
FTNR01000001
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
85247
85321
+
Tyr
GTA
[ENA]
¡û
>W1910568561
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
1421706
1421632
-
Tyr
GTA
[ENA]
¡û
>W1910572555
JMIP02000014
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
408118
408192
+
Tyr
GTA
[ENA]
¡û
>W1910572700
JNCS01000001
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
166947
166873
-
Tyr
GTA
[ENA]
¡û
>W1910575868
JROF01000002
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
99677
99603
-
Tyr
GTA
[ENA]
¡û
>W1910583010
JXAN01000037
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
1560
1486
-
Tyr
GTA
[ENA]
¡û
>W1910583039
JXAO01000004
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
68945
68871
-
Tyr
GTA
[ENA]
¡û
>W1910617591
LIUF01000002
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
324920
324994
+
Tyr
GTA
[ENA]
¡û
>W1910646108
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
586066
586140
+
Tyr
GTA
[ENA]
¡û
>W1910657579
MASN01000052
Euryarchaeota
Natrialba sp. SSL1 [MASN]
183441
183367
-
Tyr
GTA
[ENA]
¡û
>W1910826091
MWPH01000001
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
252732
252658
-
Tyr
GTA
[ENA]
¡û
>W1911433979
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2597112
2597185
+
Tyr
GTA
[ENA]
¡û
>W1911493154
OBEJ01000002
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
451891
451964
+
Tyr
GTA
[ENA]
¡û
>W1911591343
PKKI01000045
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
8887
8813
-
Tyr
GTA
[ENA]
¡û
>W1911693752
QLVG01000043
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
20238
20312
+
Tyr
GTA
[ENA]
¡û
>W1911696821
QNGA01000003
Euryarchaeota
halophilic archaeon H22 [QNGA]
393759
393833
+
Tyr
GTA
[ENA]
¡û
>W1911709455
QPLN01000001
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
634911
634837
-
Tyr
GTA
[ENA]
¡û
>W1911709592
QPLQ01000001
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
662076
662002
-
Tyr
GTA
[ENA]
¡û
>W1911709858
QPMJ01000001
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
141548
141622
+
Tyr
GTA
[ENA]
¡û
>W1911749418
QWGG01000005
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
227403
227476
+
Tyr
GTA
[ENA]
¡û
>W1911770011
QXIK01000002
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
253489
253563
+
Tyr
GTA
[ENA]
¡û
>W1610000790
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
450911
450984
+
Tyr
GTA
[ENA]
¡û
>W1610003274
AFNT02000025
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
46885
46811
-
Tyr
GTA
[ENA]
¡û
>W1610004107
AGIM01000012
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
36375
36449
+
Tyr
GTA
[ENA]
¡û
>W1610004158
AGIN01000020
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
45584
45658
+
Tyr
GTA
[ENA]
¡û
>W1610004196
AGIR01000002
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
234050
233976
-
Tyr
GTA
[ENA]
¡û
>W1610011737
AOHS01000056
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
72117
72191
+
Tyr
GTA
[ENA]
¡û
>W1610011913
AOHW01000032
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
60820
60893
+
Tyr
GTA
[ENA]
¡û
>W1610011945
AOHX01000026
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
202758
202684
-
Tyr
GTA
[ENA]
¡û
>W1610011983
AOHY01000008
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
8006
7932
-
Tyr
GTA
[ENA]
¡û
>W1610012137
AOIB01000026
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
88852
88778
-
Tyr
GTA
[ENA]
¡û
>W1610012173
AOIC01000076
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
35792
35866
+
Tyr
GTA
[ENA]
¡û
>W1610012204
AOID01000026
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
227261
227335
+
Tyr
GTA
[ENA]
¡û
>W1610012303
AOII01000067
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
62118
62044
-
Tyr
GTA
[ENA]
¡û
>W1610012339
AOIJ01000043
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
948
874
-
Tyr
GTA
[ENA]
¡û
>W1610012380
AOIK01000025
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
34824
34898
+
Tyr
GTA
[ENA]
¡û
>W1610012419
AOIL01000013
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
177446
177520
+
Tyr
GTA
[ENA]
¡û
>W1610012465
AOIM01000013
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
198222
198148
-
Tyr
GTA
[ENA]
¡û
>W1610012544
AOIO01000020
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
31476
31402
-
Tyr
GTA
[ENA]
¡û
>W1610012611
AOIP01000031
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
400446
400520
+
Tyr
GTA
[ENA]
¡û
>W1610012699
AOIR01000063
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
94724
94798
+
Tyr
GTA
[ENA]
¡û
>W1610012726
AOIS01000034
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
61718
61644
-
Tyr
GTA
[ENA]
¡û
>W1610012777
AOIT01000030
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
12449
12523
+
Tyr
GTA
[ENA]
¡û
>W1610012796
AOIU01000003
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
115936
115862
-
Tyr
GTA
[ENA]
¡û
>W1610014103
AOLQ01000004
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
128573
128647
+
Tyr
GTA
[ENA]
¡û
>W1610014168
AOLR01000005
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
128877
128803
-
Tyr
GTA
[ENA]
¡û
>W1610014265
AOLW01000010
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
140162
140235
+
Tyr
GTA
[ENA]
¡û
>W1610014338
AOLX01000025
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
79065
79139
+
Tyr
GTA
[ENA]
¡û
>W1610014438
AOLZ01000073
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
43187
43260
+
Tyr
GTA
[ENA]
¡û
>W1610019027
ARPH01000005
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
713315
713388
+
Tyr
GTA
[ENA]
¡û
>W1610019094
ARPX01000186
Euryarchaeota
Haloquadratum walsbyi J07HQW1 [ARPX]
10554
10628
+
Tyr
GTA
[ENA]
¡û
>W1610046860
BBCV01000031
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
9683
9609
-
Tyr
GTA
[ENA]
¡û
>W1610061919
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
1764100
1764026
-
Tyr
GTA
[ENA]
¡û
>W1610085082
CEML01000002
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
151277
151351
+
Tyr
GTA
[ENA]
¡û
>W1610085157
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
2356529
2356455
-
Tyr
GTA
[ENA]
¡û
>W1610085196
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
2398371
2398297
-
Tyr
GTA
[ENA]
¡û
>W1610085281
CEMR01000002
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
160068
160142
+
Tyr
GTA
[ENA]
¡û
>W1610881043
LRHL01000043
Euryarchaeota
Haloarcula sp. K1 [LRHL]
643637
643711
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
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(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
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Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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