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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.225066 (4 seq.)
>W1711326570
MBFJ01000061
Actinomycetota
Jiangella alba [MBFJ]
19662
19738
+
Leu
CAA
[ENA]
¡û
>W1810223818
POTW01000016
Actinomycetota
Jiangella anatolica GTF31 [POTW]
33590
33665
+
Leu
CAA
[ENA]
¡û
>W1511689987
LFXL01000006
Actinomycetota
Jiangella muralis DSM 45357 [LFXL]
485477
485553
+
Leu
CAA
[ENA]
¡û
>W1710537868
FNUC01000002
Actinomycetota
Jiangella alba [FNUC]
253595
253519
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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