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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.225276 (12 seq.)
>W1711188814
LWQU01000021
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
3745
3669
-
Ile
GAT
[ENA]
¡û
>W1711505334
MKVK01000023
Alphaproteobacteria
Magnetospirillum sp. 64-120 [MKVK]
2236
2312
+
Ile
GAT
[ENA]
¡û
>WENV180046667
MPLT02122104
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
310
386
+
Ile
GAT
[ENA]
¢þ
>WENV181311850
OFJB01016104
[OFJB] sludge metagenome; sludge
1718
1642
-
Ile
GAT
[ENA]
¢þ
>WENV170002439
AGTN01029961
[AGTN] bioreactor metagenome; poplar biomass
2628
2704
+
Ile
GAT
[ENA]
¢þ
>C181155058
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
258744
258820
+
Ile
GAT
-
¡û
>C181155087
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
2814754
2814678
-
Ile
GAT
-
¡û
>C181155108
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
258744
258820
+
Ile
GAT
-
¡û
>C181155137
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
2814754
2814678
-
Ile
GAT
-
¡û
>C151101052
HG794546
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 v2 [HG794546]
3844882
3844958
+
Ile
GAT
[Ensembl]
¡û
>C151101070
HG794546
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 v2 [HG794546]
2089107
2089031
-
Ile
GAT
[Ensembl]
¡û
>W1610990933
LWQU01000021
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
3745
3669
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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