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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.225748 (43 seq.)
>W1712110597
NJIX01000009
Betaproteobacteria
Achromobacter sp. HZ34 [NJIX]
217562
217486
-
Arg
TCT
[ENA]
¡û
>W1712110637
NJIY01000011
Betaproteobacteria
Achromobacter sp. HZ28 [NJIY]
217499
217423
-
Arg
TCT
[ENA]
¡û
>C171016582
CP012334
Betaproteobacteria
Bordetella sp. H567 [CP012334]
1406903
1406979
+
Arg
TCT
-
¡û
>C171115725
CP021108
Betaproteobacteria
Bordetella genomosp. 8 AU19157 [CP021108]
1509984
1510060
+
Arg
TCT
-
¡û
>C171115800
CP021109
Betaproteobacteria
Bordetella genomosp. 9 AU17164 [CP021109]
3463260
3463184
-
Arg
TCT
-
¡û
>C171115847
CP021110
Betaproteobacteria
Bordetella genomosp. 9 AU14267 [CP021110]
3346964
3346888
-
Arg
TCT
-
¡û
>C171115897
CP021111
Betaproteobacteria
Bordetella genomosp. 13 AU7206 [CP021111]
2707795
2707719
-
Arg
TCT
-
¡û
>W131156211
AQPL01000141
Betaproteobacteria
Cupriavidus sp. WS [AQPL]
35158
35234
+
Arg
TCT
[ENA]
¡û
>C018766
CP000352
Betaproteobacteria
Cupriavidus metallidurans CH34 [CP000352]
2377999
2377926
-
Arg
TCT
[Ensembl]
¡û
>WENV180026654
FTIU01010985
[FTIU] metagenome; soil
870
794
-
Arg
TCT
[ENA]
¢þ
>W141139286
AWNL01000015
Betaproteobacteria
Bordetella trematum CCUG 13902 [AWNL]
12178
12102
-
Arg
TCT
[ENA]
¡û
>W141194220
AYSW01000006
Betaproteobacteria
Robbsia andropogonis Ba3549 [AYSW]
15306
15230
-
Arg
TCT
[ENA]
¡û
>W141277451
JAEP01000006
Betaproteobacteria
Bordetella petrii J51 [JAEP]
388098
388174
+
Arg
TCT
[ENA]
¡û
>WENV170726578
LSQX01386590
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1504
1428
-
Arg
TCT
[ENA]
¢þ
>W141463892
JFJV02000035
Betaproteobacteria
Cupriavidus sp. SK-3 [JFJV]
10696
10620
-
Arg
TCT
[ENA]
¡û
>W141485139
JFZD01000072
Betaproteobacteria
Cupriavidus metallidurans [JFZD]
47712
47638
-
Arg
TCT
[ENA]
¡û
>C191012248
CP016340
Betaproteobacteria
Bordetella trematum F581 [CP016340]
3282332
3282256
-
Arg
TCT
-
¡û
>W09100036
AAAI03000007
Betaproteobacteria
Cupriavidus metallidurans CH34 [AAAI]
200353
200279
-
Arg
TCT
[ENA]
¡û
>W1910890596
NEVJ01000002
Betaproteobacteria
Bordetella genomosp. 9 9 AU21707 [NEVJ]
103991
104067
+
Arg
TCT
[ENA]
¡û
>W1910890787
NEVM01000005
Betaproteobacteria
Bordetella genomosp. 10 10 AU16122 [NEVM]
1263958
1263882
-
Arg
TCT
[ENA]
¡û
>W1910890832
NEVN01000009
Betaproteobacteria
Bordetella genomosp. 5 5 AU14646 [NEVN]
216647
216571
-
Arg
TCT
[ENA]
¡û
>W1910890874
NEVO01000012
Betaproteobacteria
Bordetella genomosp. 4 4 AU14378 [NEVO]
69245
69169
-
Arg
TCT
[ENA]
¡û
>W1910890926
NEVP01000011
Betaproteobacteria
Bordetella genomosp. 5 5 AU10456 [NEVP]
226916
226840
-
Arg
TCT
[ENA]
¡û
>W1910890960
NEVQ01000008
Betaproteobacteria
Bordetella genomosp. 4 4 AU9919 [NEVQ]
250227
250303
+
Arg
TCT
[ENA]
¡û
>W1910891048
NEVR01000006
Betaproteobacteria
Bordetella genomosp. 1 1 AU9795 [NEVR]
256225
256149
-
Arg
TCT
[ENA]
¡û
>W1910891066
NEVS01000002
Betaproteobacteria
Bordetella genomosp. 11 11 AU8856 [NEVS]
207835
207911
+
Arg
TCT
[ENA]
¡û
>W1910891195
NEVU01000003
Betaproteobacteria
Bordetella genomosp. 12 12 AU6712 [NEVU]
808881
808805
-
Arg
TCT
[ENA]
¡û
>W1911641141
PYAL01000006
Betaproteobacteria
Achromobacter aloeverae AVA-1 [PYAL]
468681
468757
+
Arg
TCT
[ENA]
¡û
>W1810596743
QGGT01000001
Betaproteobacteria
Cupriavidus plantarum SLV-132 [QGGT]
802490
802566
+
Arg
TCT
[ENA]
¡û
>W1810861211
QTTS01000001
Betaproteobacteria
Cupriavidus plantarum MA1-2za [QTTS]
1298663
1298587
-
Arg
TCT
[ENA]
¡û
>W1510015049
BBQM01000020
Betaproteobacteria
Cupriavidus basilensis KF708 [BBQM]
119348
119424
+
Arg
TCT
[ENA]
¡û
>W1511534662
JYOD01000041
Betaproteobacteria
Burkholderiaceae bacterium 16 [JYOD]
46552
46476
-
Arg
TCT
[ENA]
¡û
>W1511577559
LAQU01000006
Betaproteobacteria
Robbsia andropogonis ICMP2807 [LAQU]
137417
137341
-
Arg
TCT
[ENA]
¡û
>C161094151
CP016170
Betaproteobacteria
Bordetella bronchialis AU3182 [CP016170]
1478326
1478402
+
Arg
TCT
-
¡û
>C161094273
CP016172
Betaproteobacteria
Bordetella flabilis AU10664 [CP016172]
4440700
4440624
-
Arg
TCT
[Ensembl]
¡û
>W1610447544
FKBR01000031
Betaproteobacteria
Bordetella trematum [FKBR]
110471
110395
-
Arg
TCT
[ENA]
¡û
>W1610447572
FKBS01000002
Betaproteobacteria
Bordetella ansorpii [FKBS]
6811
6735
-
Arg
TCT
[ENA]
¡û
>W1610447661
FKBT01000035
Betaproteobacteria
Bordetella trematum [FKBT]
110430
110354
-
Arg
TCT
[ENA]
¡û
>W1610459339
FKIF01000001
Betaproteobacteria
Bordetella ansorpii [FKIF]
301555
301479
-
Arg
TCT
[ENA]
¡û
>W1710447172
FKBR01000031
Betaproteobacteria
Bordetella trematum [FKBR]
110471
110395
-
Arg
TCT
[ENA]
¡û
>W1710447200
FKBS01000002
Betaproteobacteria
Bordetella ansorpii [FKBS]
6811
6735
-
Arg
TCT
[ENA]
¡û
>W1710447289
FKBT01000035
Betaproteobacteria
Bordetella trematum [FKBT]
110430
110354
-
Arg
TCT
[ENA]
¡û
>W1710458967
FKIF01000001
Betaproteobacteria
Bordetella ansorpii [FKIF]
301555
301479
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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