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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.225931 (32 seq.)
>W1711091120
LTBC01000070
Bacillota
Moorella mulderi DSM 14980 [LTBC]
297
221
-
Ile
GAT
[ENA]
¡û
>W1711352346
MDDC01000054
Bacillota
Moorella thermoacetica [MDDC]
411
335
-
Ile
GAT
[ENA]
¡û
>W1711352421
MDDE01000002
Bacillota
Moorella thermoacetica [MDDE]
30314
30238
-
Ile
GAT
[ENA]
¡û
>W1711352424
MDDE01000002
Bacillota
Moorella thermoacetica [MDDE]
22878
22802
-
Ile
GAT
[ENA]
¡û
>W1711428617
MIIF01000057
Bacillota
Moorella thermoacetica [MIIF]
364
288
-
Ile
GAT
[ENA]
¡û
>C171055169
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
156418
156494
+
Ile
GAT
-
¡û
>C014158
CP000232
Bacillota
Moorella thermoacetica [CP000232]
149668
149744
+
Ile
GAT
[Ensembl]
¡û
>WENV181801403
OGSB01000209
[OGSB] human gut metagenome; fecal sample 5 from infant 3
1637
1713
+
Ile
GAT
[ENA]
¢þ
>WENV181810555
OGSV01000220
[OGSV] human gut metagenome; fecal sample 4 from infant 3
317
393
+
Ile
GAT
[ENA]
¢þ
>WENV181813685
OGTD01000147
[OGTD] human gut metagenome; fecal sample 1 from infant 3
85
161
+
Ile
GAT
[ENA]
¢þ
>WENV181814039
OGTE01000587
[OGTE] human gut metagenome; fecal sample 2 from infant 3
164
88
-
Ile
GAT
[ENA]
¢þ
>WENV181822998
OGUH01002708
[OGUH] human gut metagenome; fecal sample 3 from infant 3
85
161
+
Ile
GAT
[ENA]
¢þ
>W141229824
BARR01000060
Bacillota
Moorella thermoacetica Y72 [BARR]
237
161
-
Ile
GAT
[ENA]
¡û
>WENV170644118
JMBV01041880
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
155
231
+
Ile
GAT
[ENA]
¢þ
>WENV170644157
JMBV01048812
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
130
206
+
Ile
GAT
[ENA]
¢þ
>WENV170644532
JMBW01025660
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
266
342
+
Ile
GAT
[ENA]
¢þ
>WENV170644602
JMBW01037859
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
339
415
+
Ile
GAT
[ENA]
¢þ
>WENV170644629
JMBW01045339
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
22
98
+
Ile
GAT
[ENA]
¢þ
>W141451524
JFBD01000024
Bacillota
Virgibacillus alimentarius [JFBD]
3522
3446
-
Ile
GAT
[ENA]
¡û
>C191073415
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
156395
156471
+
Ile
GAT
-
¡û
>W09100962
AADT03000052
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
2040
2116
+
Ile
GAT
[ENA]
¡û
>W1910180148
BJKO01000004
Bacillota
Moorella sp. E306M [BJKO]
137
213
+
Ile
GAT
[ENA]
¡û
>W1510100242
CELZ01000013
Bacillota
Moorella glycerini NMP [CELZ]
36202
36126
-
Ile
GAT
[ENA]
¡û
>W11177425
AGAV01000003
Bacillota
Lentibacillus jeotgali Grbi [AGAV]
371142
371215
+
Ile
GAT
[ENA]
¡û
>C161061491
CP013862
Bacillota
Lentibacillus amyloliquefaciens LAM0015 [CP013862]
2511664
2511588
-
Ile
GAT
[Ensembl]
¡û
>W121010879
AGJQ01000009
Bacillota
Desulfoscipio gibsoniae DSM 7213 [AGJQ]
93584
93508
-
Ile
GAT
[ENA]
¡û
>W121010910
AGJQ01000031
Bacillota
Desulfoscipio gibsoniae DSM 7213 [AGJQ]
1604
1528
-
Ile
GAT
[ENA]
¡û
>C131002624
CP003273
Bacillota
Desulfoscipio gibsoniae DSM 7213 [CP003273]
11365
11441
+
Ile
GAT
[Ensembl]
¡û
>C131002631
CP003273
Bacillota
Desulfoscipio gibsoniae DSM 7213 [CP003273]
303453
303529
+
Ile
GAT
[Ensembl]
¡û
>W1610925319
LTBC01000070
Bacillota
Moorella mulderi DSM 14980 [LTBC]
297
221
-
Ile
GAT
[ENA]
¡û
>W1710562370
FOOX01000012
Bacillota
Desulfotruncus arcticus arcticum [FOOX]
124716
124792
+
Ile
GAT
[ENA]
¡û
>W1710574798
FOYM01000018
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
59438
59514
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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