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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.225941 (73 seq.)
>W1710854706
LLXS01000017
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
11137
11213
+
Pro
GGG
[ENA]
¡û
>W1710864822
LMGE01000011
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
124554
124478
-
Pro
GGG
[ENA]
¡û
>W1710865513
LMGS01000011
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
186417
186493
+
Pro
GGG
[ENA]
¡û
>W1710866488
LMHM01000018
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
96598
96522
-
Pro
GGG
[ENA]
¡û
>W1710867584
LMIK01000001
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
595349
595273
-
Pro
GGG
[ENA]
¡û
>W1710868994
LMJO01000001
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
1351280
1351204
-
Pro
GGG
[ENA]
¡û
>W1711386630
MEFP01000002
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-320 [MEFP]
271715
271791
+
Pro
GGG
[ENA]
¡û
>W1711387523
MEGS01000025
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-25 [MEGS]
12381
12457
+
Pro
GGG
[ENA]
¡û
>W1711424127
MIDU01000154
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYA1_FULL_68_6 [MIDU]
2414
2338
-
Pro
GGG
[ENA]
¡û
>W1711484696
MKCZ01000035
Gammaproteobacteria
Stenotrophomonas sp. BIIR7 [MKCZ]
24019
24095
+
Pro
GGG
[ENA]
¡û
>W1711506716
MKWQ01000014
Gammaproteobacteria
Xanthomonadales bacterium 69-70 [MKWQ]
142432
142356
-
Pro
GGG
[ENA]
¡û
>W1712106276
NIVS01000008
Gammaproteobacteria
Stenotrophomonas maltophilia [NIVS]
41926
42002
+
Pro
GGG
[ENA]
¡û
>C171063470
CP017483
Gammaproteobacteria
Stenotrophomonas sp. LM091 [CP017483]
807557
807481
-
Pro
GGG
-
¡û
>W131215595
ATVD01000002
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 [ATVD]
584528
584452
-
Pro
GGG
[ENA]
¡û
>WENV180035916
FTLB01055667
[FTLB] metagenome; soil
2032
2108
+
Pro
GGG
[ENA]
¢þ
>WENV180036160
FTLB01485378
[FTLB] metagenome; soil
2161
2085
-
Pro
GGG
[ENA]
¢þ
>WENV180099500
NMRC01009346
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
1025
1101
+
Pro
GGG
[ENA]
¢þ
>W141039825
ALYK02000047
Gammaproteobacteria
Stenotrophomonas maltophilia S028 [ALYK]
23927
23851
-
Pro
GGG
[ENA]
¡û
>W141094240
AVCI01000001
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 = YC6267 [AVCI]
584480
584404
-
Pro
GGG
[ENA]
¡û
>W141148231
AWXU01000009
Gammaproteobacteria
Arenimonas composti TR7-09 = DSM 18010 [AWXU]
70370
70294
-
Pro
GGG
[ENA]
¡û
>W141282812
JAJA01000001
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
287797
287873
+
Pro
GGG
[ENA]
¡û
>WENV182941767
OKVG01007125
[OKVG] human gut metagenome; human gut
507
583
+
Pro
GGG
[ENA]
¢þ
>WENV182947616
OKVM01006889
[OKVM] human gut metagenome; human gut
552
628
+
Pro
GGG
[ENA]
¢þ
>WENV182952197
OKVV01012988
[OKVV] human gut metagenome; human gut
539
463
-
Pro
GGG
[ENA]
¢þ
>WENV182954000
OKVZ01006841
[OKVZ] human gut metagenome; human gut
420
496
+
Pro
GGG
[ENA]
¢þ
>WENV183738722
PJUE01000130
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
392
468
+
Pro
GGG
[ENA]
¢þ
>WENV183740287
PJUF01001014
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
15564
15488
-
Pro
GGG
[ENA]
¢þ
>WENV183742295
PJUH01006856
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
756
832
+
Pro
GGG
[ENA]
¢þ
>WENV170706997
LNAP01010657
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
10062
10138
+
Pro
GGG
[ENA]
¢þ
>WENV170707148
LNAP01013845
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
989
1065
+
Pro
GGG
[ENA]
¢þ
>WENV170707557
LNAP01025343
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
912
988
+
Pro
GGG
[ENA]
¢þ
>WENV170708258
LNAP01063518
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1113
1037
-
Pro
GGG
[ENA]
¢þ
>WENV170744928
LULX01021132
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
329
253
-
Pro
GGG
[ENA]
¢þ
>C181000996
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
1846690
1846766
+
Pro
GGG
-
¡û
>C181081790
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
1863519
1863595
+
Pro
GGG
-
¡û
>W141713886
JMTZ01000007
Gammaproteobacteria
Lysobacter antibioticus [JMTZ]
25905
25829
-
Pro
GGG
[ENA]
¡û
>W1910212118
FMIT01000003
Gammaproteobacteria
Stenotrophomonas rhizophila [FMIT]
45340
45416
+
Pro
GGG
[ENA]
¡û
>W1910871160
NCWX01000002
Gammaproteobacteria
Stenotrophomonas rhizophila OG2 [NCWX]
379605
379529
-
Pro
GGG
[ENA]
¡û
>W1911199788
NRDP01000003
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
142503
142579
+
Pro
GGG
[ENA]
¡û
>W1911497079
OCND01000004
Gammaproteobacteria
Pseudoxanthomonas wuyuanensis CGMCC 1.10978 [OCND]
135603
135527
-
Pro
GGG
[ENA]
¡û
>W1911671952
QGAK01000006
Gammaproteobacteria
Stenotrophomonas rhizophila CFBP13529 [QGAK]
18924
18848
-
Pro
GGG
[ENA]
¡û
>W1810195300
PKQQ01000001
Gammaproteobacteria
Stenotrophomonas sp. VV52 [PKQQ]
224436
224512
+
Pro
GGG
[ENA]
¡û
>W1810485570
QAVX01000005
Gammaproteobacteria
Dyella sp. C11 [QAVX]
132014
131938
-
Pro
GGG
[ENA]
¡û
>W1810628352
QICJ01000006
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
165683
165759
+
Pro
GGG
[ENA]
¡û
>W1810762602
QQAH01000005
Gammaproteobacteria
Dyella tabacisoli L4-6 [QQAH]
134617
134693
+
Pro
GGG
[ENA]
¡û
>W1810783245
QQSY01000001
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
1081957
1081881
-
Pro
GGG
[ENA]
¡û
>W1810860372
QTSU01000001
Gammaproteobacteria
Lysobacter silvisoli zong2l5 [QTSU]
2015006
2014930
-
Pro
GGG
[ENA]
¡û
>C151023711
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
603511
603587
+
Pro
GGG
[Ensembl]
¡û
>W1511305044
JPLA01000002
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
96166
96090
-
Pro
GGG
[ENA]
¡û
>W1511594996
LBMI01000004
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
87351
87427
+
Pro
GGG
[ENA]
¡û
>W11172532
AFSN01000010
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [AFSN]
646724
646800
+
Pro
GGG
[ENA]
¡û
>C121005563
CP003093
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [CP003093]
1136114
1136190
+
Pro
GGG
[Ensembl]
¡û
>C121011583
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
2614232
2614156
-
Pro
GGG
[Ensembl]
¡û
>C161031588
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
1876079
1876155
+
Pro
GGG
[Ensembl]
¡û
>C161031655
CP011131
Gammaproteobacteria
Lysobacter gummosus 3.2.11 [CP011131]
3901890
3901814
-
Pro
GGG
[Ensembl]
¡û
>C161052093
CP013141
Gammaproteobacteria
Lysobacter antibioticus ATCC 29479 [CP013141]
4619322
4619246
-
Pro
GGG
-
¡û
>W1610042769
BAZI01000033
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
11120
11196
+
Pro
GGG
[ENA]
¡û
>W121113915
ALOY01000183
Gammaproteobacteria
Dyella japonica A8 [ALOY]
110671
110747
+
Pro
GGG
[ENA]
¡û
>W121017555
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
86379
86455
+
Pro
GGG
[ENA]
¡û
>W1610586891
LDJI01000019
Gammaproteobacteria
Stenotrophomonas humi [LDJI]
127610
127534
-
Pro
GGG
[ENA]
¡û
>W1610716983
LLXS01000017
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
11137
11213
+
Pro
GGG
[ENA]
¡û
>W1610727168
LMGE01000011
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
124554
124478
-
Pro
GGG
[ENA]
¡û
>W1610727859
LMGS01000011
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
186417
186493
+
Pro
GGG
[ENA]
¡û
>W1610728834
LMHM01000018
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
96598
96522
-
Pro
GGG
[ENA]
¡û
>W1610729930
LMIK01000001
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
595349
595273
-
Pro
GGG
[ENA]
¡û
>W1610731340
LMJO01000001
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
1351280
1351204
-
Pro
GGG
[ENA]
¡û
>W1710039929
BAZI01000033
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
11120
11196
+
Pro
GGG
[ENA]
¡û
>W1710519816
FNFA01000005
Gammaproteobacteria
Dyella jiangningensis [FNFA]
185545
185469
-
Pro
GGG
[ENA]
¡û
>W1710527589
FNLD01000001
Gammaproteobacteria
Pseudoxanthomonas sp. CF125 [FNLD]
1444905
1444829
-
Pro
GGG
[ENA]
¡û
>W1710529777
FNOG01000010
Gammaproteobacteria
Lysobacter enzymogenes [FNOG]
223983
224059
+
Pro
GGG
[ENA]
¡û
>W1710544562
FOAX01000001
Gammaproteobacteria
Pseudoxanthomonas sp. GM95 [FOAX]
865846
865922
+
Pro
GGG
[ENA]
¡û
>W1710567387
FOSS01000001
Gammaproteobacteria
Lysobacter sp. cf310 [FOSS]
268305
268229
-
Pro
GGG
[ENA]
¡û
>W1710706021
LDJI01000019
Gammaproteobacteria
Stenotrophomonas humi [LDJI]
127610
127534
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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