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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.225944 (41 seq.)
>W1711082190
LSTR01000035
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
119360
119436
+
Arg
CCT
[ENA]
¡û
>W1711083861
LSVG01000032
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
46858
46782
-
Arg
CCT
[ENA]
¡û
>W1711387021
MEGC01000061
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
2240
2164
-
Arg
CCT
[ENA]
¡û
>W1711505649
MKVS01000027
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
2235
2159
-
Arg
CCT
[ENA]
¡û
>W1712076952
NGUN01000003
Alphaproteobacteria
Sphingobium sp. GW456-12-10-14-TSB1 [NGUN]
257648
257724
+
Arg
CCT
[ENA]
¡û
>W1712084199
NHRH01000011
Alphaproteobacteria
Sphingomonas sp. CDS-1 [NHRH]
35634
35558
-
Arg
CCT
[ENA]
¡û
>W131052370
AMYX01000015
Alphaproteobacteria
alpha proteobacterium LLX12A [AMYX]
11034
11110
+
Arg
CCT
[ENA]
¡û
>W131251315
CAVK010000169
Alphaproteobacteria
Sphingobium indicum BiD32 [CAVK]
9614
9538
-
Arg
CCT
[ENA]
¡û
>WENV180040071
LLBY010365285
[LLBY] soil metagenome; soil from tomato rhizosphere
3828
3752
-
Arg
CCT
[ENA]
¢þ
>WENV180040713
LLBZ010008500
[LLBZ] soil metagenome; soil from tomato rhizosphere
2899
2823
-
Arg
CCT
[ENA]
¢þ
>WENV183729741
PJTR01000040
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
191498
191422
-
Arg
CCT
[ENA]
¢þ
>WENV183730672
PJTS01000313
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
20306
20230
-
Arg
CCT
[ENA]
¢þ
>WENV183733053
PJTY01000031
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
11075
11151
+
Arg
CCT
[ENA]
¢þ
>WENV183734480
PJTZ01010090
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
398
322
-
Arg
CCT
[ENA]
¢þ
>WENV183736997
PJUD01000198
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
11075
11151
+
Arg
CCT
[ENA]
¢þ
>WENV170136534
CENV01045875
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3122
3198
+
Arg
CCT
[ENA]
¢þ
>W141484871
JFYY01000005
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
224621
224697
+
Arg
CCT
[ENA]
¡û
>C181047574
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
1947100
1947176
+
Arg
CCT
-
¡û
>C181072092
CP022745
Alphaproteobacteria
Sphingobium xenophagum C1 [CP022745, CP022746]
2031778
2031854
+
Arg
CCT
-
¡û
>C181089665
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
444360
444436
+
Arg
CCT
-
¡û
>W141520440
JGVR01000005
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
71654
71730
+
Arg
CCT
[ENA]
¡û
>C191063651
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
2622554
2622478
-
Arg
CCT
-
¡û
>C191103894
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
5117872
5117948
+
Arg
CCT
-
¡û
>C191163697
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
4294509
4294433
-
Arg
CCT
-
¡û
>W141726146
JNAC01000066
Alphaproteobacteria
Sphingobium sp. DC-2 [JNAC]
2513
2437
-
Arg
CCT
[ENA]
¡û
>W1910006985
BBQY01000001
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
962902
962978
+
Arg
CCT
[ENA]
¡û
>W1911114849
NOIW01000166
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
2442
2518
+
Arg
CCT
[ENA]
¡û
>W1911688278
QLJK01000001
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
310340
310264
-
Arg
CCT
[ENA]
¡û
>W1911722424
QRAL01000005
Alphaproteobacteria
Sphingobium yanoikuyae SK-NIH.Env6_1116 [QRAL]
142121
142197
+
Arg
CCT
[ENA]
¡û
>W10126782
AEDK01000003
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
142973
142897
-
Arg
CCT
[ENA]
¡û
>W1510941341
JFFT01000018
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
35483
35559
+
Arg
CCT
[ENA]
¡û
>C11119795
CP002798
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [CP002798, CP002799]
1628432
1628356
-
Arg
CCT
[Ensembl]
¡û
>W11134043
AEDK01000003
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
142973
142897
-
Arg
CCT
[ENA]
¡û
>C161003367
CP005083
Alphaproteobacteria
Sphingobium sp. TKS [CP005083, CP005084]
3053375
3053299
-
Arg
CCT
[Ensembl]
¡û
>C161092740
CP015986
Alphaproteobacteria
Sphingobium sp. EP60837 [CP015986, CP015987]
770804
770728
-
Arg
CCT
[Ensembl]
¡û
>W1610076911
BCZC01000163
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
22598
22522
-
Arg
CCT
[ENA]
¡û
>W121068957
AJVL01000056
Alphaproteobacteria
Sphingobium sp. AP49 [AJVL]
112817
112893
+
Arg
CCT
[ENA]
¡û
>W121084313
AKIB01000011
Alphaproteobacteria
Sphingobium xenophagum QYY [AKIB]
4634
4558
-
Arg
CCT
[ENA]
¡û
>W1610920975
LSTR01000035
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
119360
119436
+
Arg
CCT
[ENA]
¡û
>W1610922614
LSVG01000032
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
46858
46782
-
Arg
CCT
[ENA]
¡û
>W1710074600
BCZC01000163
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
22598
22522
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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