This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.226378 (7 seq.)
>WENV180250110
OBEQ010257269
[OBEQ] groundwater metagenome; groundwater
46284
46209
-
Trp
CCA
[ENA]
¢þ
>WENV180250142
OBEQ010259335
[OBEQ] groundwater metagenome; groundwater
314
239
-
Trp
CCA
[ENA]
¢þ
>WENV180250466
OBEQ010285740
[OBEQ] groundwater metagenome; groundwater
394
469
+
Trp
CCA
[ENA]
¢þ
>WENV180255236
OBEQ010707383
[OBEQ] groundwater metagenome; groundwater
602
527
-
Trp
CCA
[ENA]
¢þ
>WENV180255903
OBEQ010766341
[OBEQ] groundwater metagenome; groundwater
600
525
-
Trp
CCA
[ENA]
¢þ
>WENV180257031
OBEQ010873823
[OBEQ] groundwater metagenome; groundwater
331
256
-
Trp
CCA
[ENA]
¢þ
>WENV183679333
ORMF010048285
[ORMF] groundwater metagenome; groundwater
15007
14932
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK